Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17310

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17300 and SGL_RS17305 are separated by 133 nucleotidesSGL_RS17305 and SGL_RS17310 are separated by 14 nucleotidesSGL_RS17310 and SGL_RS17315 are separated by 196 nucleotidesSGL_RS17315 and SGL_RS17320 are separated by 36 nucleotides SGL_RS17300: SGL_RS17300 - M3 family metallopeptidase, at 3,336,464 to 3,338,548 _RS17300 SGL_RS17305: SGL_RS17305 - pyrroline-5-carboxylate reductase, at 3,338,682 to 3,339,485 _RS17305 SGL_RS17310: SGL_RS17310 - glycoside hydrolase 100 family protein, at 3,339,500 to 3,340,969 _RS17310 SGL_RS17315: SGL_RS17315 - class I SAM-dependent methyltransferase, at 3,341,166 to 3,341,843 _RS17315 SGL_RS17320: SGL_RS17320 - hypothetical protein, at 3,341,880 to 3,342,128 _RS17320 Position (kb) 3339 3340 3341Strain fitness (log2 ratio) -3 -2 -1 0 1at 3338.536 kb on - strandat 3338.538 kb on + strandat 3338.546 kb on - strandat 3338.668 kb on - strandat 3338.668 kb on - strandat 3338.859 kb on - strand, within SGL_RS17305at 3338.912 kb on - strand, within SGL_RS17305at 3339.007 kb on - strand, within SGL_RS17305at 3339.032 kb on + strand, within SGL_RS17305at 3339.113 kb on + strand, within SGL_RS17305at 3339.113 kb on + strand, within SGL_RS17305at 3339.137 kb on + strand, within SGL_RS17305at 3339.255 kb on + strand, within SGL_RS17305at 3339.367 kb on + strand, within SGL_RS17305at 3339.553 kb on - strandat 3339.819 kb on - strand, within SGL_RS17310at 3339.922 kb on - strand, within SGL_RS17310at 3339.950 kb on + strand, within SGL_RS17310at 3340.169 kb on - strand, within SGL_RS17310at 3340.280 kb on + strand, within SGL_RS17310at 3340.313 kb on + strand, within SGL_RS17310at 3340.448 kb on + strand, within SGL_RS17310at 3340.610 kb on + strand, within SGL_RS17310at 3340.656 kb on + strand, within SGL_RS17310at 3340.865 kb on + strandat 3340.990 kb on - strandat 3341.066 kb on - strandat 3341.275 kb on - strand, within SGL_RS17315at 3341.482 kb on - strand, within SGL_RS17315at 3341.482 kb on - strand, within SGL_RS17315at 3341.506 kb on - strand, within SGL_RS17315at 3341.525 kb on + strand, within SGL_RS17315at 3341.586 kb on + strand, within SGL_RS17315at 3341.655 kb on + strand, within SGL_RS17315at 3341.768 kb on - strand, within SGL_RS17315

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,338,536 - +0.2
3,338,538 + -0.0
3,338,546 - +0.5
3,338,668 - -1.9
3,338,668 - -2.9
3,338,859 - SGL_RS17305 0.22 -1.3
3,338,912 - SGL_RS17305 0.29 -2.3
3,339,007 - SGL_RS17305 0.40 -3.7
3,339,032 + SGL_RS17305 0.44 -0.5
3,339,113 + SGL_RS17305 0.54 -1.6
3,339,113 + SGL_RS17305 0.54 -2.6
3,339,137 + SGL_RS17305 0.57 -3.2
3,339,255 + SGL_RS17305 0.71 -3.4
3,339,367 + SGL_RS17305 0.85 -2.5
3,339,553 - +0.3
3,339,819 - SGL_RS17310 0.22 +1.0
3,339,922 - SGL_RS17310 0.29 +1.2
3,339,950 + SGL_RS17310 0.31 +0.5
3,340,169 - SGL_RS17310 0.46 +1.0
3,340,280 + SGL_RS17310 0.53 +1.2
3,340,313 + SGL_RS17310 0.55 +1.0
3,340,448 + SGL_RS17310 0.64 +1.1
3,340,610 + SGL_RS17310 0.76 -0.1
3,340,656 + SGL_RS17310 0.79 +0.8
3,340,865 + +0.9
3,340,990 - +1.0
3,341,066 - -1.0
3,341,275 - SGL_RS17315 0.16 +0.0
3,341,482 - SGL_RS17315 0.47 +0.7
3,341,482 - SGL_RS17315 0.47 +1.5
3,341,506 - SGL_RS17315 0.50 +0.7
3,341,525 + SGL_RS17315 0.53 +0.6
3,341,586 + SGL_RS17315 0.62 +1.0
3,341,655 + SGL_RS17315 0.72 +0.6
3,341,768 - SGL_RS17315 0.89 +0.0

Or see this region's nucleotide sequence