Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17270

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17260 and SGL_RS17265 are separated by 72 nucleotidesSGL_RS17265 and SGL_RS17270 are separated by 200 nucleotidesSGL_RS17270 and SGL_RS17275 are separated by 2 nucleotidesSGL_RS17275 and SGL_RS17280 are separated by 37 nucleotides SGL_RS17260: SGL_RS17260 - 23S ribosomal RNA, at 3,327,007 to 3,329,890 _RS17260 SGL_RS17265: SGL_RS17265 - 5S ribosomal RNA, at 3,329,963 to 3,330,080 _RS17265 SGL_RS17270: SGL_RS17270 - hypothetical protein, at 3,330,281 to 3,331,042 _RS17270 SGL_RS17275: SGL_RS17275 - DUF427 domain-containing protein, at 3,331,045 to 3,331,587 _RS17275 SGL_RS17280: SGL_RS17280 - GNAT family N-acetyltransferase, at 3,331,625 to 3,332,821 _RS17280 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -1 0 1 2 3at 3330.930 kb on + strand, within SGL_RS17270at 3330.950 kb on + strand, within SGL_RS17270at 3330.960 kb on - strand, within SGL_RS17270at 3331.043 kb on - strandat 3331.347 kb on + strand, within SGL_RS17275at 3331.355 kb on - strand, within SGL_RS17275at 3331.633 kb on + strandat 3331.702 kb on - strandat 3331.763 kb on + strand, within SGL_RS17280at 3331.785 kb on + strand, within SGL_RS17280at 3331.820 kb on - strand, within SGL_RS17280at 3331.822 kb on - strand, within SGL_RS17280at 3331.822 kb on - strand, within SGL_RS17280at 3331.931 kb on - strand, within SGL_RS17280

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,330,930 + SGL_RS17270 0.85 +2.7
3,330,950 + SGL_RS17270 0.88 +3.1
3,330,960 - SGL_RS17270 0.89 +2.7
3,331,043 - +0.3
3,331,347 + SGL_RS17275 0.56 -1.3
3,331,355 - SGL_RS17275 0.57 -0.1
3,331,633 + +0.5
3,331,702 - -0.3
3,331,763 + SGL_RS17280 0.12 +1.3
3,331,785 + SGL_RS17280 0.13 +0.7
3,331,820 - SGL_RS17280 0.16 +0.7
3,331,822 - SGL_RS17280 0.16 -1.4
3,331,822 - SGL_RS17280 0.16 +0.5
3,331,931 - SGL_RS17280 0.26 +0.7

Or see this region's nucleotide sequence