Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17115

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17105 and SGL_RS17110 are separated by 87 nucleotidesSGL_RS17110 and SGL_RS17115 are separated by 193 nucleotidesSGL_RS17115 and SGL_RS17120 overlap by 8 nucleotides SGL_RS17105: SGL_RS17105 - tRNA-Leu, at 3,292,004 to 3,292,089 _RS17105 SGL_RS17110: SGL_RS17110 - hypothetical protein, at 3,292,177 to 3,292,884 _RS17110 SGL_RS17115: SGL_RS17115 - DUF3370 domain-containing protein, at 3,293,078 to 3,294,505 _RS17115 SGL_RS17120: SGL_RS17120 - response regulator transcription factor, at 3,294,498 to 3,295,250 _RS17120 Position (kb) 3293 3294 3295Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 3292.278 kb on - strand, within SGL_RS17110at 3292.325 kb on - strand, within SGL_RS17110at 3292.387 kb on + strand, within SGL_RS17110at 3292.587 kb on + strand, within SGL_RS17110at 3292.595 kb on - strand, within SGL_RS17110at 3292.596 kb on + strand, within SGL_RS17110at 3292.616 kb on + strand, within SGL_RS17110at 3292.789 kb on + strand, within SGL_RS17110at 3292.970 kb on - strandat 3293.223 kb on + strand, within SGL_RS17115at 3293.231 kb on - strand, within SGL_RS17115at 3293.360 kb on - strand, within SGL_RS17115at 3293.370 kb on + strand, within SGL_RS17115at 3293.483 kb on - strand, within SGL_RS17115at 3293.742 kb on - strand, within SGL_RS17115at 3294.017 kb on + strand, within SGL_RS17115at 3294.291 kb on - strand, within SGL_RS17115at 3294.296 kb on - strand, within SGL_RS17115at 3294.607 kb on + strand, within SGL_RS17120at 3294.607 kb on + strand, within SGL_RS17120at 3294.607 kb on + strand, within SGL_RS17120at 3294.611 kb on + strand, within SGL_RS17120at 3294.703 kb on + strand, within SGL_RS17120at 3294.706 kb on - strand, within SGL_RS17120at 3294.717 kb on + strand, within SGL_RS17120at 3294.764 kb on + strand, within SGL_RS17120at 3294.967 kb on + strand, within SGL_RS17120at 3294.967 kb on + strand, within SGL_RS17120at 3294.987 kb on + strand, within SGL_RS17120at 3295.058 kb on + strand, within SGL_RS17120at 3295.155 kb on + strand, within SGL_RS17120at 3295.176 kb on + strandat 3295.184 kb on - strandat 3295.199 kb on - strandat 3295.247 kb on - strandat 3295.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,292,278 - SGL_RS17110 0.14 -2.8
3,292,325 - SGL_RS17110 0.21 -3.5
3,292,387 + SGL_RS17110 0.30 -0.9
3,292,587 + SGL_RS17110 0.58 -4.9
3,292,595 - SGL_RS17110 0.59 +1.0
3,292,596 + SGL_RS17110 0.59 -3.4
3,292,616 + SGL_RS17110 0.62 -3.2
3,292,789 + SGL_RS17110 0.86 -3.2
3,292,970 - +1.3
3,293,223 + SGL_RS17115 0.10 +4.2
3,293,231 - SGL_RS17115 0.11 +4.7
3,293,360 - SGL_RS17115 0.20 +4.5
3,293,370 + SGL_RS17115 0.20 +4.1
3,293,483 - SGL_RS17115 0.28 +5.0
3,293,742 - SGL_RS17115 0.46 +4.4
3,294,017 + SGL_RS17115 0.66 +4.7
3,294,291 - SGL_RS17115 0.85 +5.3
3,294,296 - SGL_RS17115 0.85 +5.0
3,294,607 + SGL_RS17120 0.14 -0.5
3,294,607 + SGL_RS17120 0.14 +0.7
3,294,607 + SGL_RS17120 0.14 -0.4
3,294,611 + SGL_RS17120 0.15 -0.3
3,294,703 + SGL_RS17120 0.27 -0.7
3,294,706 - SGL_RS17120 0.28 -0.5
3,294,717 + SGL_RS17120 0.29 -0.8
3,294,764 + SGL_RS17120 0.35 -0.2
3,294,967 + SGL_RS17120 0.62 +0.1
3,294,967 + SGL_RS17120 0.62 -0.2
3,294,987 + SGL_RS17120 0.65 -0.8
3,295,058 + SGL_RS17120 0.74 -0.8
3,295,155 + SGL_RS17120 0.87 -0.8
3,295,176 + +0.3
3,295,184 - -0.5
3,295,199 - -0.4
3,295,247 - -0.5
3,295,502 + -0.1

Or see this region's nucleotide sequence