Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17100

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17095 and SGL_RS17100 are separated by 311 nucleotidesSGL_RS17100 and SGL_RS17105 are separated by 37 nucleotidesSGL_RS17105 and SGL_RS17110 are separated by 87 nucleotides SGL_RS17095: SGL_RS17095 - GAF domain-containing protein, at 3,289,256 to 3,290,785 _RS17095 SGL_RS17100: SGL_RS17100 - SWIM zinc finger family protein, at 3,291,097 to 3,291,966 _RS17100 SGL_RS17105: SGL_RS17105 - tRNA-Leu, at 3,292,004 to 3,292,089 _RS17105 SGL_RS17110: SGL_RS17110 - hypothetical protein, at 3,292,177 to 3,292,884 _RS17110 Position (kb) 3291 3292Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3290.111 kb on + strand, within SGL_RS17095at 3290.127 kb on - strand, within SGL_RS17095at 3290.139 kb on + strand, within SGL_RS17095at 3290.315 kb on + strand, within SGL_RS17095at 3290.465 kb on + strand, within SGL_RS17095at 3290.473 kb on - strand, within SGL_RS17095at 3290.630 kb on + strand, within SGL_RS17095at 3290.638 kb on - strandat 3290.881 kb on - strandat 3290.908 kb on - strandat 3290.965 kb on + strandat 3291.125 kb on + strandat 3291.326 kb on - strand, within SGL_RS17100at 3291.367 kb on + strand, within SGL_RS17100at 3291.393 kb on - strand, within SGL_RS17100at 3291.398 kb on + strand, within SGL_RS17100at 3291.621 kb on + strand, within SGL_RS17100at 3291.621 kb on + strand, within SGL_RS17100at 3291.634 kb on - strand, within SGL_RS17100at 3291.650 kb on + strand, within SGL_RS17100at 3291.665 kb on - strand, within SGL_RS17100at 3291.665 kb on - strand, within SGL_RS17100at 3291.822 kb on + strand, within SGL_RS17100at 3292.278 kb on - strand, within SGL_RS17110at 3292.325 kb on - strand, within SGL_RS17110at 3292.387 kb on + strand, within SGL_RS17110at 3292.587 kb on + strand, within SGL_RS17110at 3292.595 kb on - strand, within SGL_RS17110at 3292.596 kb on + strand, within SGL_RS17110at 3292.616 kb on + strand, within SGL_RS17110at 3292.789 kb on + strand, within SGL_RS17110

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,290,111 + SGL_RS17095 0.56 +0.3
3,290,127 - SGL_RS17095 0.57 +0.3
3,290,139 + SGL_RS17095 0.58 +0.5
3,290,315 + SGL_RS17095 0.69 +0.3
3,290,465 + SGL_RS17095 0.79 -0.1
3,290,473 - SGL_RS17095 0.80 +0.3
3,290,630 + SGL_RS17095 0.90 +0.8
3,290,638 - -0.0
3,290,881 - +0.2
3,290,908 - +0.1
3,290,965 + -0.1
3,291,125 + +2.0
3,291,326 - SGL_RS17100 0.26 +2.5
3,291,367 + SGL_RS17100 0.31 +2.5
3,291,393 - SGL_RS17100 0.34 +3.4
3,291,398 + SGL_RS17100 0.35 +2.6
3,291,621 + SGL_RS17100 0.60 +2.3
3,291,621 + SGL_RS17100 0.60 +1.9
3,291,634 - SGL_RS17100 0.62 +2.5
3,291,650 + SGL_RS17100 0.64 +1.8
3,291,665 - SGL_RS17100 0.65 +2.1
3,291,665 - SGL_RS17100 0.65 +2.3
3,291,822 + SGL_RS17100 0.83 +2.1
3,292,278 - SGL_RS17110 0.14 -2.8
3,292,325 - SGL_RS17110 0.21 -3.5
3,292,387 + SGL_RS17110 0.30 -0.9
3,292,587 + SGL_RS17110 0.58 -4.9
3,292,595 - SGL_RS17110 0.59 +1.0
3,292,596 + SGL_RS17110 0.59 -3.4
3,292,616 + SGL_RS17110 0.62 -3.2
3,292,789 + SGL_RS17110 0.86 -3.2

Or see this region's nucleotide sequence