Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16950 and SGL_RS16955 are separated by 249 nucleotides SGL_RS16955 and SGL_RS16960 are separated by 129 nucleotides SGL_RS16960 and SGL_RS16965 are separated by 1 nucleotides
SGL_RS16950: SGL_RS16950 - phosphoketolase, at 3,257,692 to 3,259,887
_RS16950
SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276
_RS16955
SGL_RS16960: SGL_RS16960 - YggS family pyridoxal phosphate-dependent enzyme, at 3,261,406 to 3,262,062
_RS16960
SGL_RS16965: SGL_RS16965 - type II toxin-antitoxin system VapC family toxin, at 3,262,064 to 3,262,459
_RS16965
Position (kb)
3260
3261
3262 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3259.198 kb on + strand, within SGL_RS16950 at 3259.470 kb on + strand, within SGL_RS16950 at 3259.639 kb on - strand, within SGL_RS16950 at 3259.772 kb on + strand at 3259.876 kb on + strand at 3260.042 kb on - strand at 3260.042 kb on - strand at 3260.055 kb on - strand at 3260.167 kb on - strand at 3260.357 kb on + strand, within SGL_RS16955 at 3260.487 kb on + strand, within SGL_RS16955 at 3260.623 kb on - strand, within SGL_RS16955 at 3260.747 kb on - strand, within SGL_RS16955 at 3260.754 kb on + strand, within SGL_RS16955 at 3260.772 kb on - strand, within SGL_RS16955 at 3260.794 kb on - strand, within SGL_RS16955 at 3261.021 kb on + strand, within SGL_RS16955 at 3261.029 kb on - strand, within SGL_RS16955 at 3261.150 kb on - strand, within SGL_RS16955 at 3261.255 kb on + strand at 3261.334 kb on - strand at 3261.442 kb on + strand at 3261.445 kb on + strand at 3261.455 kb on + strand at 3261.463 kb on - strand at 3261.495 kb on - strand, within SGL_RS16960 at 3261.554 kb on - strand, within SGL_RS16960 at 3261.632 kb on - strand, within SGL_RS16960 at 3261.632 kb on - strand, within SGL_RS16960 at 3261.876 kb on - strand, within SGL_RS16960 at 3261.879 kb on + strand, within SGL_RS16960 at 3261.977 kb on - strand, within SGL_RS16960 at 3261.977 kb on - strand, within SGL_RS16960 at 3262.140 kb on + strand, within SGL_RS16965
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,259,198 + SGL_RS16950 0.69 -0.5 3,259,470 + SGL_RS16950 0.81 -1.0 3,259,639 - SGL_RS16950 0.89 -1.5 3,259,772 + -0.6 3,259,876 + -1.1 3,260,042 - +0.2 3,260,042 - -0.3 3,260,055 - +0.6 3,260,167 - +0.2 3,260,357 + SGL_RS16955 0.19 +0.8 3,260,487 + SGL_RS16955 0.31 +1.5 3,260,623 - SGL_RS16955 0.43 +0.8 3,260,747 - SGL_RS16955 0.54 +1.3 3,260,754 + SGL_RS16955 0.54 +0.8 3,260,772 - SGL_RS16955 0.56 +0.8 3,260,794 - SGL_RS16955 0.58 +1.0 3,261,021 + SGL_RS16955 0.78 +3.0 3,261,029 - SGL_RS16955 0.78 +1.2 3,261,150 - SGL_RS16955 0.89 +1.0 3,261,255 + +0.5 3,261,334 - +0.8 3,261,442 + +0.4 3,261,445 + +1.1 3,261,455 + -0.2 3,261,463 - -0.0 3,261,495 - SGL_RS16960 0.14 +0.3 3,261,554 - SGL_RS16960 0.23 +0.7 3,261,632 - SGL_RS16960 0.34 +0.5 3,261,632 - SGL_RS16960 0.34 -1.0 3,261,876 - SGL_RS16960 0.72 +0.5 3,261,879 + SGL_RS16960 0.72 +0.1 3,261,977 - SGL_RS16960 0.87 +0.4 3,261,977 - SGL_RS16960 0.87 -0.3 3,262,140 + SGL_RS16965 0.19 +0.4
Or see this region's nucleotide sequence