Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16530 and SGL_RS16535 are separated by 12 nucleotides SGL_RS16535 and SGL_RS16540 are separated by 62 nucleotides
SGL_RS16530: SGL_RS16530 - pyridoxal phosphate-dependent aminotransferase, at 3,160,723 to 3,161,886
_RS16530
SGL_RS16535: SGL_RS16535 - D-alanyl-D-alanine carboxypeptidase family protein, at 3,161,899 to 3,162,675
_RS16535
SGL_RS16540: SGL_RS16540 - carotene isomerase, at 3,162,738 to 3,164,243
_RS16540
Position (kb)
3161
3162
3163 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3161.011 kb on - strand, within SGL_RS16530 at 3161.028 kb on + strand, within SGL_RS16530 at 3161.046 kb on - strand, within SGL_RS16530 at 3161.130 kb on + strand, within SGL_RS16530 at 3161.187 kb on + strand, within SGL_RS16530 at 3161.318 kb on - strand, within SGL_RS16530 at 3161.379 kb on + strand, within SGL_RS16530 at 3161.412 kb on - strand, within SGL_RS16530 at 3161.430 kb on - strand, within SGL_RS16530 at 3161.430 kb on - strand, within SGL_RS16530 at 3161.501 kb on + strand, within SGL_RS16530 at 3161.647 kb on - strand, within SGL_RS16530 at 3161.682 kb on - strand, within SGL_RS16530 at 3161.776 kb on - strand at 3161.804 kb on + strand at 3161.855 kb on + strand at 3162.166 kb on + strand, within SGL_RS16535 at 3162.407 kb on - strand, within SGL_RS16535 at 3162.474 kb on + strand, within SGL_RS16535 at 3162.491 kb on + strand, within SGL_RS16535 at 3162.491 kb on + strand, within SGL_RS16535 at 3162.499 kb on - strand, within SGL_RS16535 at 3162.567 kb on + strand, within SGL_RS16535 at 3162.574 kb on + strand, within SGL_RS16535 at 3162.575 kb on - strand, within SGL_RS16535 at 3162.801 kb on + strand at 3162.809 kb on - strand at 3162.919 kb on - strand, within SGL_RS16540 at 3162.950 kb on + strand, within SGL_RS16540 at 3162.978 kb on + strand, within SGL_RS16540 at 3163.111 kb on - strand, within SGL_RS16540 at 3163.325 kb on - strand, within SGL_RS16540 at 3163.389 kb on - strand, within SGL_RS16540 at 3163.554 kb on - strand, within SGL_RS16540 at 3163.622 kb on - strand, within SGL_RS16540
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,161,011 - SGL_RS16530 0.25 +0.2 3,161,028 + SGL_RS16530 0.26 -0.5 3,161,046 - SGL_RS16530 0.28 +0.8 3,161,130 + SGL_RS16530 0.35 -0.4 3,161,187 + SGL_RS16530 0.40 -0.5 3,161,318 - SGL_RS16530 0.51 -3.4 3,161,379 + SGL_RS16530 0.56 +0.2 3,161,412 - SGL_RS16530 0.59 -0.2 3,161,430 - SGL_RS16530 0.61 -0.4 3,161,430 - SGL_RS16530 0.61 -1.0 3,161,501 + SGL_RS16530 0.67 +0.1 3,161,647 - SGL_RS16530 0.79 +0.3 3,161,682 - SGL_RS16530 0.82 -0.6 3,161,776 - -0.0 3,161,804 + -0.2 3,161,855 + +0.1 3,162,166 + SGL_RS16535 0.34 +1.7 3,162,407 - SGL_RS16535 0.65 +1.6 3,162,474 + SGL_RS16535 0.74 +1.7 3,162,491 + SGL_RS16535 0.76 +1.5 3,162,491 + SGL_RS16535 0.76 +1.2 3,162,499 - SGL_RS16535 0.77 +0.1 3,162,567 + SGL_RS16535 0.86 +1.3 3,162,574 + SGL_RS16535 0.87 +1.3 3,162,575 - SGL_RS16535 0.87 +1.8 3,162,801 + -0.2 3,162,809 - -0.5 3,162,919 - SGL_RS16540 0.12 +0.2 3,162,950 + SGL_RS16540 0.14 +0.2 3,162,978 + SGL_RS16540 0.16 +0.4 3,163,111 - SGL_RS16540 0.25 -0.1 3,163,325 - SGL_RS16540 0.39 +0.7 3,163,389 - SGL_RS16540 0.43 +0.4 3,163,554 - SGL_RS16540 0.54 -0.2 3,163,622 - SGL_RS16540 0.59 -0.3
Or see this region's nucleotide sequence