Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16440

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16430 and SGL_RS16435 are separated by 46 nucleotidesSGL_RS16435 and SGL_RS16440 are separated by 21 nucleotidesSGL_RS16440 and SGL_RS16445 are separated by 312 nucleotides SGL_RS16430: SGL_RS16430 - molybdate ABC transporter permease subunit, at 3,133,291 to 3,135,138 _RS16430 SGL_RS16435: SGL_RS16435 - molybdate ABC transporter substrate-binding protein, at 3,135,185 to 3,135,997 _RS16435 SGL_RS16440: SGL_RS16440 - O-antigen ligase family protein, at 3,136,019 to 3,138,604 _RS16440 SGL_RS16445: SGL_RS16445 - diguanylate cyclase, at 3,138,917 to 3,139,855 _RS16445 Position (kb) 3136 3137 3138 3139Strain fitness (log2 ratio) -1 0 1 2at 3135.128 kb on - strandat 3135.128 kb on - strandat 3135.131 kb on + strandat 3135.158 kb on + strandat 3135.158 kb on - strandat 3135.226 kb on + strandat 3135.285 kb on - strand, within SGL_RS16435at 3135.344 kb on - strand, within SGL_RS16435at 3135.422 kb on + strand, within SGL_RS16435at 3135.430 kb on - strand, within SGL_RS16435at 3135.454 kb on - strand, within SGL_RS16435at 3135.505 kb on - strand, within SGL_RS16435at 3135.509 kb on + strand, within SGL_RS16435at 3135.522 kb on - strand, within SGL_RS16435at 3135.526 kb on + strand, within SGL_RS16435at 3135.719 kb on - strand, within SGL_RS16435at 3135.735 kb on - strand, within SGL_RS16435at 3135.735 kb on - strand, within SGL_RS16435at 3135.757 kb on + strand, within SGL_RS16435at 3135.757 kb on - strand, within SGL_RS16435at 3136.121 kb on + strandat 3136.164 kb on + strandat 3136.173 kb on - strandat 3136.189 kb on + strandat 3136.195 kb on + strandat 3136.279 kb on - strand, within SGL_RS16440at 3136.281 kb on + strand, within SGL_RS16440at 3136.331 kb on - strand, within SGL_RS16440at 3136.335 kb on + strand, within SGL_RS16440at 3136.363 kb on - strand, within SGL_RS16440at 3136.363 kb on - strand, within SGL_RS16440at 3136.675 kb on - strand, within SGL_RS16440at 3136.765 kb on + strand, within SGL_RS16440at 3136.765 kb on + strand, within SGL_RS16440at 3136.773 kb on - strand, within SGL_RS16440at 3136.778 kb on - strand, within SGL_RS16440at 3136.863 kb on - strand, within SGL_RS16440at 3136.888 kb on - strand, within SGL_RS16440at 3136.913 kb on + strand, within SGL_RS16440at 3136.913 kb on + strand, within SGL_RS16440at 3136.913 kb on + strand, within SGL_RS16440at 3136.921 kb on - strand, within SGL_RS16440at 3136.957 kb on + strand, within SGL_RS16440at 3136.957 kb on + strand, within SGL_RS16440at 3136.978 kb on + strand, within SGL_RS16440at 3137.011 kb on - strand, within SGL_RS16440at 3137.014 kb on + strand, within SGL_RS16440at 3137.032 kb on - strand, within SGL_RS16440at 3137.506 kb on + strand, within SGL_RS16440at 3137.553 kb on + strand, within SGL_RS16440at 3137.561 kb on - strand, within SGL_RS16440at 3137.610 kb on + strand, within SGL_RS16440at 3137.629 kb on - strand, within SGL_RS16440at 3137.691 kb on + strand, within SGL_RS16440at 3137.773 kb on + strand, within SGL_RS16440at 3137.781 kb on - strand, within SGL_RS16440at 3137.809 kb on + strand, within SGL_RS16440at 3137.817 kb on - strand, within SGL_RS16440at 3137.849 kb on + strand, within SGL_RS16440at 3138.007 kb on + strand, within SGL_RS16440at 3138.073 kb on - strand, within SGL_RS16440at 3138.226 kb on + strand, within SGL_RS16440at 3138.312 kb on - strand, within SGL_RS16440at 3138.358 kb on - strandat 3138.402 kb on + strandat 3138.446 kb on + strandat 3138.497 kb on - strandat 3138.500 kb on + strandat 3138.506 kb on + strandat 3138.506 kb on + strandat 3138.506 kb on + strandat 3138.514 kb on - strandat 3138.663 kb on - strandat 3138.814 kb on + strandat 3138.825 kb on + strandat 3138.885 kb on + strandat 3138.887 kb on - strandat 3138.890 kb on + strandat 3138.914 kb on + strandat 3138.935 kb on - strandat 3138.949 kb on + strandat 3139.020 kb on - strand, within SGL_RS16445at 3139.037 kb on - strand, within SGL_RS16445at 3139.057 kb on + strand, within SGL_RS16445at 3139.095 kb on - strand, within SGL_RS16445at 3139.104 kb on + strand, within SGL_RS16445at 3139.236 kb on + strand, within SGL_RS16445at 3139.425 kb on + strand, within SGL_RS16445at 3139.438 kb on - strand, within SGL_RS16445at 3139.443 kb on - strand, within SGL_RS16445

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,135,128 - -0.1
3,135,128 - +0.1
3,135,131 + -0.6
3,135,158 + -0.2
3,135,158 - -0.7
3,135,226 + -0.1
3,135,285 - SGL_RS16435 0.12 -0.6
3,135,344 - SGL_RS16435 0.20 -1.1
3,135,422 + SGL_RS16435 0.29 +0.3
3,135,430 - SGL_RS16435 0.30 +0.2
3,135,454 - SGL_RS16435 0.33 -0.4
3,135,505 - SGL_RS16435 0.39 -0.4
3,135,509 + SGL_RS16435 0.40 -0.0
3,135,522 - SGL_RS16435 0.41 -0.2
3,135,526 + SGL_RS16435 0.42 +0.2
3,135,719 - SGL_RS16435 0.66 +0.0
3,135,735 - SGL_RS16435 0.68 +0.1
3,135,735 - SGL_RS16435 0.68 +0.4
3,135,757 + SGL_RS16435 0.70 +0.0
3,135,757 - SGL_RS16435 0.70 +0.1
3,136,121 + +1.5
3,136,164 + +1.4
3,136,173 - +1.4
3,136,189 + +1.5
3,136,195 + +1.6
3,136,279 - SGL_RS16440 0.10 +1.4
3,136,281 + SGL_RS16440 0.10 +1.7
3,136,331 - SGL_RS16440 0.12 +1.8
3,136,335 + SGL_RS16440 0.12 +1.2
3,136,363 - SGL_RS16440 0.13 +1.4
3,136,363 - SGL_RS16440 0.13 +0.8
3,136,675 - SGL_RS16440 0.25 +1.5
3,136,765 + SGL_RS16440 0.29 +1.9
3,136,765 + SGL_RS16440 0.29 +1.6
3,136,773 - SGL_RS16440 0.29 +1.3
3,136,778 - SGL_RS16440 0.29 +1.0
3,136,863 - SGL_RS16440 0.33 +1.3
3,136,888 - SGL_RS16440 0.34 +1.0
3,136,913 + SGL_RS16440 0.35 +1.8
3,136,913 + SGL_RS16440 0.35 +1.4
3,136,913 + SGL_RS16440 0.35 +2.1
3,136,921 - SGL_RS16440 0.35 +0.5
3,136,957 + SGL_RS16440 0.36 +1.7
3,136,957 + SGL_RS16440 0.36 +1.5
3,136,978 + SGL_RS16440 0.37 +1.6
3,137,011 - SGL_RS16440 0.38 +1.4
3,137,014 + SGL_RS16440 0.38 +1.2
3,137,032 - SGL_RS16440 0.39 +1.8
3,137,506 + SGL_RS16440 0.58 +1.6
3,137,553 + SGL_RS16440 0.59 +2.4
3,137,561 - SGL_RS16440 0.60 +0.9
3,137,610 + SGL_RS16440 0.62 +1.7
3,137,629 - SGL_RS16440 0.62 +1.2
3,137,691 + SGL_RS16440 0.65 +1.6
3,137,773 + SGL_RS16440 0.68 +1.6
3,137,781 - SGL_RS16440 0.68 +0.9
3,137,809 + SGL_RS16440 0.69 +1.8
3,137,817 - SGL_RS16440 0.70 -0.0
3,137,849 + SGL_RS16440 0.71 +1.5
3,138,007 + SGL_RS16440 0.77 +1.5
3,138,073 - SGL_RS16440 0.79 +0.7
3,138,226 + SGL_RS16440 0.85 +1.1
3,138,312 - SGL_RS16440 0.89 +1.3
3,138,358 - +1.4
3,138,402 + +1.2
3,138,446 + +1.3
3,138,497 - +0.5
3,138,500 + +0.5
3,138,506 + +1.6
3,138,506 + +1.5
3,138,506 + +1.4
3,138,514 - +0.7
3,138,663 - -0.7
3,138,814 + -0.6
3,138,825 + +0.4
3,138,885 + -0.7
3,138,887 - -0.4
3,138,890 + +0.1
3,138,914 + -0.3
3,138,935 - -0.0
3,138,949 + -0.8
3,139,020 - SGL_RS16445 0.11 +0.6
3,139,037 - SGL_RS16445 0.13 +0.0
3,139,057 + SGL_RS16445 0.15 -0.3
3,139,095 - SGL_RS16445 0.19 +0.5
3,139,104 + SGL_RS16445 0.20 +0.0
3,139,236 + SGL_RS16445 0.34 -0.2
3,139,425 + SGL_RS16445 0.54 -0.2
3,139,438 - SGL_RS16445 0.55 +0.0
3,139,443 - SGL_RS16445 0.56 +0.7

Or see this region's nucleotide sequence