Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16340 and SGL_RS16345 are separated by 124 nucleotides SGL_RS16345 and SGL_RS16350 overlap by 1 nucleotides SGL_RS16350 and SGL_RS16355 are separated by 80 nucleotides SGL_RS16355 and SGL_RS16360 are separated by 359 nucleotides
SGL_RS16340: SGL_RS16340 - lysylphosphatidylglycerol synthase domain-containing protein, at 3,114,479 to 3,115,447
_RS16340
SGL_RS16345: SGL_RS16345 - ferredoxin, at 3,115,572 to 3,115,973
_RS16345
SGL_RS16350: SGL_RS16350 - DUF1257 domain-containing protein, at 3,115,973 to 3,116,359
_RS16350
SGL_RS16355: SGL_RS16355 - DUF2997 domain-containing protein, at 3,116,440 to 3,116,682
_RS16355
SGL_RS16360: SGL_RS16360 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,117,042 to 3,118,091
_RS16360
Position (kb)
3115
3116
3117 Strain fitness (log2 ratio)
-1
0
1
2 at 3115.053 kb on - strand, within SGL_RS16340 at 3115.158 kb on + strand, within SGL_RS16340 at 3115.161 kb on - strand, within SGL_RS16340 at 3115.161 kb on - strand, within SGL_RS16340 at 3115.238 kb on + strand, within SGL_RS16340 at 3115.238 kb on - strand, within SGL_RS16340 at 3115.287 kb on + strand, within SGL_RS16340 at 3115.348 kb on + strand, within SGL_RS16340 at 3115.355 kb on + strand at 3115.363 kb on - strand at 3115.363 kb on - strand at 3115.700 kb on - strand, within SGL_RS16345 at 3115.740 kb on + strand, within SGL_RS16345 at 3115.909 kb on + strand, within SGL_RS16345 at 3116.053 kb on - strand, within SGL_RS16350 at 3116.090 kb on - strand, within SGL_RS16350 at 3116.140 kb on + strand, within SGL_RS16350 at 3116.141 kb on + strand, within SGL_RS16350 at 3116.193 kb on - strand, within SGL_RS16350 at 3116.247 kb on - strand, within SGL_RS16350 at 3116.252 kb on - strand, within SGL_RS16350 at 3116.279 kb on + strand, within SGL_RS16350 at 3116.321 kb on - strand at 3116.476 kb on - strand, within SGL_RS16355 at 3116.548 kb on + strand, within SGL_RS16355 at 3116.628 kb on + strand, within SGL_RS16355 at 3116.654 kb on - strand, within SGL_RS16355 at 3116.850 kb on + strand at 3116.852 kb on + strand at 3116.889 kb on + strand at 3116.942 kb on + strand at 3116.950 kb on - strand at 3117.134 kb on - strand at 3117.260 kb on - strand, within SGL_RS16360
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 3,115,053 - SGL_RS16340 0.59 +0.2 3,115,158 + SGL_RS16340 0.70 +0.3 3,115,161 - SGL_RS16340 0.70 +0.4 3,115,161 - SGL_RS16340 0.70 +0.2 3,115,238 + SGL_RS16340 0.78 +1.2 3,115,238 - SGL_RS16340 0.78 -0.4 3,115,287 + SGL_RS16340 0.83 +0.5 3,115,348 + SGL_RS16340 0.90 -0.1 3,115,355 + +0.2 3,115,363 - +0.5 3,115,363 - +0.3 3,115,700 - SGL_RS16345 0.32 -0.0 3,115,740 + SGL_RS16345 0.42 +0.1 3,115,909 + SGL_RS16345 0.84 +0.2 3,116,053 - SGL_RS16350 0.21 +0.2 3,116,090 - SGL_RS16350 0.30 +0.2 3,116,140 + SGL_RS16350 0.43 +1.9 3,116,141 + SGL_RS16350 0.43 +0.4 3,116,193 - SGL_RS16350 0.57 +0.4 3,116,247 - SGL_RS16350 0.71 +1.0 3,116,252 - SGL_RS16350 0.72 +0.5 3,116,279 + SGL_RS16350 0.79 -0.2 3,116,321 - -0.3 3,116,476 - SGL_RS16355 0.15 +0.2 3,116,548 + SGL_RS16355 0.44 -0.1 3,116,628 + SGL_RS16355 0.77 -0.0 3,116,654 - SGL_RS16355 0.88 +0.1 3,116,850 + -0.1 3,116,852 + +0.1 3,116,889 + -0.1 3,116,942 + +1.7 3,116,950 - +0.1 3,117,134 - -1.6 3,117,260 - SGL_RS16360 0.21 -1.3
Or see this region's nucleotide sequence