Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16325

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16320 and SGL_RS16325 are separated by 165 nucleotidesSGL_RS16325 and SGL_RS16330 are separated by 128 nucleotides SGL_RS16320: SGL_RS16320 - hypothetical protein, at 3,110,910 to 3,111,830 _RS16320 SGL_RS16325: SGL_RS16325 - RidA family protein, at 3,111,996 to 3,112,388 _RS16325 SGL_RS16330: SGL_RS16330 - NADP-specific glutamate dehydrogenase, at 3,112,517 to 3,113,803 _RS16330 Position (kb) 3111 3112 3113Strain fitness (log2 ratio) -1 0 1 2at 3111.321 kb on - strand, within SGL_RS16320at 3112.028 kb on - strandat 3112.045 kb on + strand, within SGL_RS16325at 3112.128 kb on + strand, within SGL_RS16325at 3112.184 kb on + strand, within SGL_RS16325at 3112.192 kb on - strand, within SGL_RS16325at 3112.318 kb on - strand, within SGL_RS16325at 3112.326 kb on - strand, within SGL_RS16325at 3112.376 kb on + strandat 3112.382 kb on - strandat 3112.395 kb on + strandat 3112.482 kb on - strandat 3112.697 kb on + strand, within SGL_RS16330at 3112.701 kb on + strand, within SGL_RS16330at 3112.715 kb on + strand, within SGL_RS16330at 3112.723 kb on - strand, within SGL_RS16330at 3112.723 kb on - strand, within SGL_RS16330at 3112.760 kb on + strand, within SGL_RS16330at 3112.768 kb on - strand, within SGL_RS16330at 3112.786 kb on + strand, within SGL_RS16330at 3112.794 kb on - strand, within SGL_RS16330at 3112.853 kb on + strand, within SGL_RS16330at 3112.888 kb on + strand, within SGL_RS16330at 3112.949 kb on - strand, within SGL_RS16330at 3112.956 kb on + strand, within SGL_RS16330at 3112.985 kb on + strand, within SGL_RS16330at 3113.021 kb on + strand, within SGL_RS16330at 3113.077 kb on + strand, within SGL_RS16330at 3113.102 kb on + strand, within SGL_RS16330at 3113.124 kb on - strand, within SGL_RS16330at 3113.156 kb on + strand, within SGL_RS16330at 3113.318 kb on + strand, within SGL_RS16330at 3113.318 kb on + strand, within SGL_RS16330

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,111,321 - SGL_RS16320 0.45 +0.1
3,112,028 - +1.1
3,112,045 + SGL_RS16325 0.12 +0.3
3,112,128 + SGL_RS16325 0.34 +2.1
3,112,184 + SGL_RS16325 0.48 +1.5
3,112,192 - SGL_RS16325 0.50 +0.6
3,112,318 - SGL_RS16325 0.82 +0.6
3,112,326 - SGL_RS16325 0.84 +1.3
3,112,376 + -0.5
3,112,382 - +0.9
3,112,395 + -0.9
3,112,482 - +0.9
3,112,697 + SGL_RS16330 0.14 +0.3
3,112,701 + SGL_RS16330 0.14 -0.2
3,112,715 + SGL_RS16330 0.15 -0.2
3,112,723 - SGL_RS16330 0.16 -0.2
3,112,723 - SGL_RS16330 0.16 +0.4
3,112,760 + SGL_RS16330 0.19 -0.2
3,112,768 - SGL_RS16330 0.20 -1.0
3,112,786 + SGL_RS16330 0.21 -0.7
3,112,794 - SGL_RS16330 0.22 +0.9
3,112,853 + SGL_RS16330 0.26 +0.3
3,112,888 + SGL_RS16330 0.29 -1.3
3,112,949 - SGL_RS16330 0.34 +0.6
3,112,956 + SGL_RS16330 0.34 -1.0
3,112,985 + SGL_RS16330 0.36 +0.3
3,113,021 + SGL_RS16330 0.39 +0.7
3,113,077 + SGL_RS16330 0.44 -0.2
3,113,102 + SGL_RS16330 0.45 +0.1
3,113,124 - SGL_RS16330 0.47 -0.2
3,113,156 + SGL_RS16330 0.50 +0.3
3,113,318 + SGL_RS16330 0.62 -0.6
3,113,318 + SGL_RS16330 0.62 +0.0

Or see this region's nucleotide sequence