Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16065

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16055 and SGL_RS16060 are separated by 121 nucleotidesSGL_RS16060 and SGL_RS16065 are separated by 38 nucleotidesSGL_RS16065 and SGL_RS16070 are separated by 79 nucleotidesSGL_RS16070 and SGL_RS16075 are separated by 114 nucleotides SGL_RS16055: SGL_RS16055 - two-component system response regulator RppA, at 3,050,263 to 3,050,967 _RS16055 SGL_RS16060: SGL_RS16060 - efflux RND transporter periplasmic adaptor subunit, at 3,051,089 to 3,051,733 _RS16060 SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936 _RS16065 SGL_RS16070: SGL_RS16070 - glycoside hydrolase family protein, at 3,055,016 to 3,055,699 _RS16070 SGL_RS16075: SGL_RS16075 - MFS transporter, at 3,055,814 to 3,057,151 _RS16075 Position (kb) 3051 3052 3053 3054 3055Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3050.786 kb on - strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.892 kb on - strand, within SGL_RS16055at 3051.044 kb on - strandat 3051.044 kb on - strandat 3051.083 kb on + strandat 3051.275 kb on - strand, within SGL_RS16060at 3051.285 kb on - strand, within SGL_RS16060at 3051.352 kb on + strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.505 kb on + strand, within SGL_RS16060at 3051.586 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.659 kb on - strand, within SGL_RS16060at 3051.828 kb on - strandat 3051.832 kb on - strandat 3051.872 kb on - strandat 3051.887 kb on + strandat 3051.955 kb on - strandat 3052.052 kb on + strandat 3052.069 kb on + strandat 3052.072 kb on - strandat 3052.080 kb on + strandat 3052.092 kb on + strand, within SGL_RS16065at 3052.185 kb on - strand, within SGL_RS16065at 3052.199 kb on + strand, within SGL_RS16065at 3052.238 kb on + strand, within SGL_RS16065at 3052.308 kb on - strand, within SGL_RS16065at 3052.382 kb on + strand, within SGL_RS16065at 3052.431 kb on - strand, within SGL_RS16065at 3052.448 kb on - strand, within SGL_RS16065at 3052.594 kb on + strand, within SGL_RS16065at 3052.602 kb on - strand, within SGL_RS16065at 3052.679 kb on + strand, within SGL_RS16065at 3052.683 kb on + strand, within SGL_RS16065at 3052.754 kb on + strand, within SGL_RS16065at 3052.880 kb on + strand, within SGL_RS16065at 3052.903 kb on + strand, within SGL_RS16065at 3052.912 kb on + strand, within SGL_RS16065at 3052.965 kb on - strand, within SGL_RS16065at 3052.966 kb on - strand, within SGL_RS16065at 3052.967 kb on + strand, within SGL_RS16065at 3052.967 kb on + strand, within SGL_RS16065at 3052.975 kb on - strand, within SGL_RS16065at 3053.011 kb on + strand, within SGL_RS16065at 3053.039 kb on + strand, within SGL_RS16065at 3053.060 kb on + strand, within SGL_RS16065at 3053.091 kb on - strand, within SGL_RS16065at 3053.131 kb on + strand, within SGL_RS16065at 3053.131 kb on + strand, within SGL_RS16065at 3053.131 kb on - strand, within SGL_RS16065at 3053.174 kb on + strand, within SGL_RS16065at 3053.182 kb on - strand, within SGL_RS16065at 3053.239 kb on - strand, within SGL_RS16065at 3053.320 kb on - strand, within SGL_RS16065at 3053.337 kb on + strand, within SGL_RS16065at 3053.337 kb on + strand, within SGL_RS16065at 3053.358 kb on - strand, within SGL_RS16065at 3053.382 kb on - strand, within SGL_RS16065at 3053.391 kb on - strand, within SGL_RS16065at 3053.395 kb on + strand, within SGL_RS16065at 3053.403 kb on - strand, within SGL_RS16065at 3053.403 kb on - strand, within SGL_RS16065at 3053.533 kb on + strand, within SGL_RS16065at 3053.604 kb on + strand, within SGL_RS16065at 3053.773 kb on - strand, within SGL_RS16065at 3053.969 kb on + strand, within SGL_RS16065at 3053.976 kb on - strand, within SGL_RS16065at 3053.977 kb on - strand, within SGL_RS16065at 3053.993 kb on - strand, within SGL_RS16065at 3054.015 kb on - strand, within SGL_RS16065at 3054.090 kb on + strand, within SGL_RS16065at 3054.201 kb on + strand, within SGL_RS16065at 3054.420 kb on - strand, within SGL_RS16065at 3054.473 kb on + strand, within SGL_RS16065at 3054.548 kb on + strand, within SGL_RS16065at 3054.558 kb on + strand, within SGL_RS16065at 3054.579 kb on - strand, within SGL_RS16065at 3054.581 kb on + strand, within SGL_RS16065at 3054.589 kb on - strand, within SGL_RS16065at 3054.661 kb on - strandat 3054.666 kb on + strandat 3054.700 kb on + strandat 3054.708 kb on - strandat 3054.822 kb on - strandat 3054.869 kb on + strandat 3055.512 kb on + strand, within SGL_RS16070at 3055.553 kb on + strand, within SGL_RS16070at 3055.556 kb on - strand, within SGL_RS16070at 3055.865 kb on + strandat 3055.867 kb on + strandat 3055.867 kb on + strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.875 kb on - strandat 3055.904 kb on + strandat 3055.904 kb on + strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.912 kb on - strandat 3055.914 kb on + strandat 3055.915 kb on + strandat 3055.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,050,786 - SGL_RS16055 0.74 -3.7
3,050,824 + SGL_RS16055 0.80 -5.3
3,050,824 + SGL_RS16055 0.80 -6.0
3,050,832 - SGL_RS16055 0.81 -4.4
3,050,832 - SGL_RS16055 0.81 -6.5
3,050,892 - SGL_RS16055 0.89 -4.3
3,051,044 - -4.1
3,051,044 - -5.4
3,051,083 + -5.2
3,051,275 - SGL_RS16060 0.29 -3.4
3,051,285 - SGL_RS16060 0.30 -4.4
3,051,352 + SGL_RS16060 0.41 -5.1
3,051,403 - SGL_RS16060 0.49 -6.2
3,051,403 - SGL_RS16060 0.49 -4.8
3,051,505 + SGL_RS16060 0.64 -2.6
3,051,586 + SGL_RS16060 0.77 -3.6
3,051,651 + SGL_RS16060 0.87 -2.9
3,051,651 + SGL_RS16060 0.87 -3.4
3,051,659 - SGL_RS16060 0.88 -4.4
3,051,828 - -5.9
3,051,832 - -5.6
3,051,872 - -8.1
3,051,887 + -7.2
3,051,955 - -5.2
3,052,052 + -6.8
3,052,069 + -6.6
3,052,072 - -4.2
3,052,080 + -7.2
3,052,092 + SGL_RS16065 0.10 -5.4
3,052,185 - SGL_RS16065 0.13 -8.2
3,052,199 + SGL_RS16065 0.13 -6.3
3,052,238 + SGL_RS16065 0.15 -6.5
3,052,308 - SGL_RS16065 0.17 -6.7
3,052,382 + SGL_RS16065 0.19 -6.5
3,052,431 - SGL_RS16065 0.21 -7.9
3,052,448 - SGL_RS16065 0.21 -6.1
3,052,594 + SGL_RS16065 0.26 -5.6
3,052,602 - SGL_RS16065 0.26 -6.2
3,052,679 + SGL_RS16065 0.29 -3.4
3,052,683 + SGL_RS16065 0.29 -5.5
3,052,754 + SGL_RS16065 0.31 -6.8
3,052,880 + SGL_RS16065 0.35 -7.9
3,052,903 + SGL_RS16065 0.36 -6.9
3,052,912 + SGL_RS16065 0.36 -6.8
3,052,965 - SGL_RS16065 0.38 -4.9
3,052,966 - SGL_RS16065 0.38 -5.4
3,052,967 + SGL_RS16065 0.38 -7.1
3,052,967 + SGL_RS16065 0.38 -3.6
3,052,975 - SGL_RS16065 0.38 -4.3
3,053,011 + SGL_RS16065 0.39 -7.8
3,053,039 + SGL_RS16065 0.40 -3.2
3,053,060 + SGL_RS16065 0.41 -7.7
3,053,091 - SGL_RS16065 0.42 -5.5
3,053,131 + SGL_RS16065 0.43 -3.1
3,053,131 + SGL_RS16065 0.43 -6.1
3,053,131 - SGL_RS16065 0.43 -7.3
3,053,174 + SGL_RS16065 0.44 -3.9
3,053,182 - SGL_RS16065 0.45 -1.6
3,053,239 - SGL_RS16065 0.46 -7.0
3,053,320 - SGL_RS16065 0.49 -6.9
3,053,337 + SGL_RS16065 0.49 -7.8
3,053,337 + SGL_RS16065 0.49 -6.6
3,053,358 - SGL_RS16065 0.50 -5.0
3,053,382 - SGL_RS16065 0.51 -5.6
3,053,391 - SGL_RS16065 0.51 -6.5
3,053,395 + SGL_RS16065 0.51 -7.0
3,053,403 - SGL_RS16065 0.52 -7.0
3,053,403 - SGL_RS16065 0.52 -3.4
3,053,533 + SGL_RS16065 0.56 -7.6
3,053,604 + SGL_RS16065 0.58 -5.6
3,053,773 - SGL_RS16065 0.63 -7.7
3,053,969 + SGL_RS16065 0.69 -4.4
3,053,976 - SGL_RS16065 0.70 -5.7
3,053,977 - SGL_RS16065 0.70 -5.6
3,053,993 - SGL_RS16065 0.70 -4.7
3,054,015 - SGL_RS16065 0.71 -4.0
3,054,090 + SGL_RS16065 0.73 -5.7
3,054,201 + SGL_RS16065 0.77 -4.3
3,054,420 - SGL_RS16065 0.84 -6.2
3,054,473 + SGL_RS16065 0.85 -6.1
3,054,548 + SGL_RS16065 0.88 -4.1
3,054,558 + SGL_RS16065 0.88 -6.7
3,054,579 - SGL_RS16065 0.89 -2.7
3,054,581 + SGL_RS16065 0.89 -5.4
3,054,589 - SGL_RS16065 0.89 -7.0
3,054,661 - -5.6
3,054,666 + -2.3
3,054,700 + -5.0
3,054,708 - -6.7
3,054,822 - -7.5
3,054,869 + +1.3
3,055,512 + SGL_RS16070 0.73 -0.3
3,055,553 + SGL_RS16070 0.79 -0.8
3,055,556 - SGL_RS16070 0.79 -0.5
3,055,865 + -3.8
3,055,867 + -3.0
3,055,867 + -3.2
3,055,875 - -2.4
3,055,875 - -3.6
3,055,875 - -3.0
3,055,904 + -5.7
3,055,904 + -4.0
3,055,912 - -6.0
3,055,912 - -2.7
3,055,912 - -4.1
3,055,914 + -4.7
3,055,915 + -4.1
3,055,917 - -4.9

Or see this region's nucleotide sequence