Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16060

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16050 and SGL_RS16055 overlap by 4 nucleotidesSGL_RS16055 and SGL_RS16060 are separated by 121 nucleotidesSGL_RS16060 and SGL_RS16065 are separated by 38 nucleotides SGL_RS16050: SGL_RS16050 - two-component system sensor histidine kinase RppB, at 3,048,902 to 3,050,266 _RS16050 SGL_RS16055: SGL_RS16055 - two-component system response regulator RppA, at 3,050,263 to 3,050,967 _RS16055 SGL_RS16060: SGL_RS16060 - efflux RND transporter periplasmic adaptor subunit, at 3,051,089 to 3,051,733 _RS16060 SGL_RS16065: SGL_RS16065 - CusA/CzcA family heavy metal efflux RND transporter, at 3,051,772 to 3,054,936 _RS16065 Position (kb) 3051 3052Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3050.137 kb on - strandat 3050.150 kb on - strandat 3050.150 kb on - strandat 3050.178 kb on - strandat 3050.183 kb on - strandat 3050.193 kb on - strandat 3050.268 kb on + strandat 3050.287 kb on + strandat 3050.378 kb on - strand, within SGL_RS16055at 3050.439 kb on + strand, within SGL_RS16055at 3050.552 kb on - strand, within SGL_RS16055at 3050.564 kb on - strand, within SGL_RS16055at 3050.570 kb on - strand, within SGL_RS16055at 3050.619 kb on - strand, within SGL_RS16055at 3050.621 kb on - strand, within SGL_RS16055at 3050.755 kb on - strand, within SGL_RS16055at 3050.786 kb on - strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.824 kb on + strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.832 kb on - strand, within SGL_RS16055at 3050.892 kb on - strand, within SGL_RS16055at 3051.044 kb on - strandat 3051.044 kb on - strandat 3051.083 kb on + strandat 3051.275 kb on - strand, within SGL_RS16060at 3051.285 kb on - strand, within SGL_RS16060at 3051.352 kb on + strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.403 kb on - strand, within SGL_RS16060at 3051.505 kb on + strand, within SGL_RS16060at 3051.586 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.651 kb on + strand, within SGL_RS16060at 3051.659 kb on - strand, within SGL_RS16060at 3051.828 kb on - strandat 3051.832 kb on - strandat 3051.872 kb on - strandat 3051.887 kb on + strandat 3051.955 kb on - strandat 3052.052 kb on + strandat 3052.069 kb on + strandat 3052.072 kb on - strandat 3052.080 kb on + strandat 3052.092 kb on + strand, within SGL_RS16065at 3052.185 kb on - strand, within SGL_RS16065at 3052.199 kb on + strand, within SGL_RS16065at 3052.238 kb on + strand, within SGL_RS16065at 3052.308 kb on - strand, within SGL_RS16065at 3052.382 kb on + strand, within SGL_RS16065at 3052.431 kb on - strand, within SGL_RS16065at 3052.448 kb on - strand, within SGL_RS16065at 3052.594 kb on + strand, within SGL_RS16065at 3052.602 kb on - strand, within SGL_RS16065at 3052.679 kb on + strand, within SGL_RS16065at 3052.683 kb on + strand, within SGL_RS16065

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,050,137 - -3.9
3,050,150 - -4.6
3,050,150 - -5.3
3,050,178 - -3.4
3,050,183 - -5.7
3,050,193 - -5.1
3,050,268 + -2.6
3,050,287 + -6.4
3,050,378 - SGL_RS16055 0.16 -4.9
3,050,439 + SGL_RS16055 0.25 -5.8
3,050,552 - SGL_RS16055 0.41 -5.3
3,050,564 - SGL_RS16055 0.43 -4.5
3,050,570 - SGL_RS16055 0.44 -6.6
3,050,619 - SGL_RS16055 0.50 -4.8
3,050,621 - SGL_RS16055 0.51 -5.9
3,050,755 - SGL_RS16055 0.70 -4.7
3,050,786 - SGL_RS16055 0.74 -3.7
3,050,824 + SGL_RS16055 0.80 -5.3
3,050,824 + SGL_RS16055 0.80 -6.0
3,050,832 - SGL_RS16055 0.81 -4.4
3,050,832 - SGL_RS16055 0.81 -6.5
3,050,892 - SGL_RS16055 0.89 -4.3
3,051,044 - -4.1
3,051,044 - -5.4
3,051,083 + -5.2
3,051,275 - SGL_RS16060 0.29 -3.4
3,051,285 - SGL_RS16060 0.30 -4.4
3,051,352 + SGL_RS16060 0.41 -5.1
3,051,403 - SGL_RS16060 0.49 -6.2
3,051,403 - SGL_RS16060 0.49 -4.8
3,051,505 + SGL_RS16060 0.64 -2.6
3,051,586 + SGL_RS16060 0.77 -3.6
3,051,651 + SGL_RS16060 0.87 -2.9
3,051,651 + SGL_RS16060 0.87 -3.4
3,051,659 - SGL_RS16060 0.88 -4.4
3,051,828 - -5.9
3,051,832 - -5.6
3,051,872 - -8.1
3,051,887 + -7.2
3,051,955 - -5.2
3,052,052 + -6.8
3,052,069 + -6.6
3,052,072 - -4.2
3,052,080 + -7.2
3,052,092 + SGL_RS16065 0.10 -5.4
3,052,185 - SGL_RS16065 0.13 -8.2
3,052,199 + SGL_RS16065 0.13 -6.3
3,052,238 + SGL_RS16065 0.15 -6.5
3,052,308 - SGL_RS16065 0.17 -6.7
3,052,382 + SGL_RS16065 0.19 -6.5
3,052,431 - SGL_RS16065 0.21 -7.9
3,052,448 - SGL_RS16065 0.21 -6.1
3,052,594 + SGL_RS16065 0.26 -5.6
3,052,602 - SGL_RS16065 0.26 -6.2
3,052,679 + SGL_RS16065 0.29 -3.4
3,052,683 + SGL_RS16065 0.29 -5.5

Or see this region's nucleotide sequence