Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15920

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15915 and SGL_RS15920 are separated by 71 nucleotidesSGL_RS15920 and SGL_RS15925 are separated by 123 nucleotides SGL_RS15915: SGL_RS15915 - bifunctional metallophosphatase/5'-nucleotidase, at 3,020,301 to 3,021,821 _RS15915 SGL_RS15920: SGL_RS15920 - GNAT family N-acetyltransferase, at 3,021,893 to 3,022,408 _RS15920 SGL_RS15925: SGL_RS15925 - ATP-binding protein, at 3,022,532 to 3,024,271 _RS15925 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -1 0 1 2at 3020.904 kb on - strand, within SGL_RS15915at 3021.132 kb on - strand, within SGL_RS15915at 3021.142 kb on - strand, within SGL_RS15915at 3021.213 kb on + strand, within SGL_RS15915at 3021.219 kb on - strand, within SGL_RS15915at 3021.347 kb on - strand, within SGL_RS15915at 3021.393 kb on - strand, within SGL_RS15915at 3021.408 kb on - strand, within SGL_RS15915at 3021.430 kb on - strand, within SGL_RS15915at 3021.450 kb on - strand, within SGL_RS15915at 3021.458 kb on - strand, within SGL_RS15915at 3021.494 kb on + strand, within SGL_RS15915at 3021.523 kb on - strand, within SGL_RS15915at 3021.620 kb on + strand, within SGL_RS15915at 3021.625 kb on + strand, within SGL_RS15915at 3021.633 kb on - strand, within SGL_RS15915at 3021.925 kb on + strandat 3021.925 kb on + strandat 3021.933 kb on - strandat 3021.970 kb on + strand, within SGL_RS15920at 3021.971 kb on + strand, within SGL_RS15920at 3022.045 kb on - strand, within SGL_RS15920at 3022.045 kb on - strand, within SGL_RS15920at 3022.049 kb on + strand, within SGL_RS15920at 3022.049 kb on + strand, within SGL_RS15920at 3022.069 kb on + strand, within SGL_RS15920at 3022.069 kb on + strand, within SGL_RS15920at 3022.069 kb on - strand, within SGL_RS15920at 3022.103 kb on + strand, within SGL_RS15920at 3022.141 kb on + strand, within SGL_RS15920at 3022.196 kb on + strand, within SGL_RS15920at 3022.251 kb on - strand, within SGL_RS15920at 3022.274 kb on + strand, within SGL_RS15920at 3022.281 kb on - strand, within SGL_RS15920at 3022.352 kb on + strand, within SGL_RS15920at 3022.454 kb on + strandat 3022.526 kb on - strandat 3022.568 kb on + strandat 3022.576 kb on - strandat 3022.646 kb on + strandat 3022.662 kb on + strandat 3022.672 kb on + strandat 3022.677 kb on - strandat 3022.679 kb on + strandat 3022.687 kb on - strandat 3022.687 kb on - strandat 3022.687 kb on - strandat 3022.687 kb on - strandat 3022.687 kb on - strandat 3022.715 kb on + strand, within SGL_RS15925at 3022.723 kb on - strand, within SGL_RS15925at 3022.847 kb on - strand, within SGL_RS15925at 3022.962 kb on - strand, within SGL_RS15925at 3023.049 kb on - strand, within SGL_RS15925at 3023.064 kb on - strand, within SGL_RS15925at 3023.345 kb on + strand, within SGL_RS15925

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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3,020,904 - SGL_RS15915 0.40 -0.3
3,021,132 - SGL_RS15915 0.55 -0.1
3,021,142 - SGL_RS15915 0.55 +0.9
3,021,213 + SGL_RS15915 0.60 +0.2
3,021,219 - SGL_RS15915 0.60 -0.0
3,021,347 - SGL_RS15915 0.69 +0.5
3,021,393 - SGL_RS15915 0.72 +0.9
3,021,408 - SGL_RS15915 0.73 +0.0
3,021,430 - SGL_RS15915 0.74 +0.3
3,021,450 - SGL_RS15915 0.76 -0.6
3,021,458 - SGL_RS15915 0.76 -0.0
3,021,494 + SGL_RS15915 0.78 -0.0
3,021,523 - SGL_RS15915 0.80 -0.1
3,021,620 + SGL_RS15915 0.87 +0.2
3,021,625 + SGL_RS15915 0.87 +0.8
3,021,633 - SGL_RS15915 0.88 -0.9
3,021,925 + +0.6
3,021,925 + +1.7
3,021,933 - +0.4
3,021,970 + SGL_RS15920 0.15 +1.3
3,021,971 + SGL_RS15920 0.15 +1.4
3,022,045 - SGL_RS15920 0.29 +1.1
3,022,045 - SGL_RS15920 0.29 +1.3
3,022,049 + SGL_RS15920 0.30 +1.3
3,022,049 + SGL_RS15920 0.30 +1.1
3,022,069 + SGL_RS15920 0.34 +0.7
3,022,069 + SGL_RS15920 0.34 +0.3
3,022,069 - SGL_RS15920 0.34 +1.6
3,022,103 + SGL_RS15920 0.41 +0.9
3,022,141 + SGL_RS15920 0.48 +1.3
3,022,196 + SGL_RS15920 0.59 +1.3
3,022,251 - SGL_RS15920 0.69 +0.4
3,022,274 + SGL_RS15920 0.74 +1.2
3,022,281 - SGL_RS15920 0.75 +0.7
3,022,352 + SGL_RS15920 0.89 +1.1
3,022,454 + +1.0
3,022,526 - -0.2
3,022,568 + -0.3
3,022,576 - +0.1
3,022,646 + -0.4
3,022,662 + +0.1
3,022,672 + +1.1
3,022,677 - +0.7
3,022,679 + +0.7
3,022,687 - +1.2
3,022,687 - +1.6
3,022,687 - +0.0
3,022,687 - +0.2
3,022,687 - +0.4
3,022,715 + SGL_RS15925 0.11 +0.0
3,022,723 - SGL_RS15925 0.11 +1.9
3,022,847 - SGL_RS15925 0.18 +0.2
3,022,962 - SGL_RS15925 0.25 +0.4
3,023,049 - SGL_RS15925 0.30 +0.2
3,023,064 - SGL_RS15925 0.31 +1.4
3,023,345 + SGL_RS15925 0.47 -0.1

Or see this region's nucleotide sequence