Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15825

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS20015 and SGL_RS15825 are separated by 255 nucleotidesSGL_RS15825 and SGL_RS15830 are separated by 225 nucleotides SGL_RS20015: SGL_RS20015 - IS701 family transposase, at 2,998,239 to 2,998,925 _RS20015 SGL_RS15825: SGL_RS15825 - phosphomethylpyrimidine synthase, at 2,999,181 to 3,000,560 _RS15825 SGL_RS15830: SGL_RS15830 - YihY/virulence factor BrkB family protein, at 3,000,786 to 3,001,742 _RS15830 Position (kb) 2999 3000 3001Strain fitness (log2 ratio) -1 0 1 2at 2998.266 kb on + strandat 2998.266 kb on + strandat 2998.973 kb on + strandat 2999.025 kb on + strandat 2999.025 kb on + strandat 2999.690 kb on + strand, within SGL_RS15825at 3000.561 kb on + strandat 3000.669 kb on - strandat 3000.733 kb on + strandat 3000.744 kb on + strandat 3000.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,998,266 + +0.1
2,998,266 + -0.2
2,998,973 + +0.1
2,999,025 + -0.3
2,999,025 + +0.6
2,999,690 + SGL_RS15825 0.37 -1.6
3,000,561 + +2.1
3,000,669 - +0.3
3,000,733 + -0.1
3,000,744 + +0.4
3,000,789 - -0.4

Or see this region's nucleotide sequence