Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15805

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15800 and SGL_RS15805 are separated by 190 nucleotidesSGL_RS15805 and SGL_RS15810 are separated by 61 nucleotides SGL_RS15800: SGL_RS15800 - PP2C family protein-serine/threonine phosphatase, at 2,994,188 to 2,995,717 _RS15800 SGL_RS15805: SGL_RS15805 - two component system response regulator RpaA, at 2,995,908 to 2,996,633 _RS15805 SGL_RS15810: SGL_RS15810 - phycocyanobilin:ferredoxin oxidoreductase, at 2,996,695 to 2,997,441 _RS15810 Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -1 0 1 2 3 4at 2995.125 kb on - strand, within SGL_RS15800at 2995.277 kb on - strand, within SGL_RS15800at 2995.296 kb on + strand, within SGL_RS15800at 2995.304 kb on - strand, within SGL_RS15800at 2995.524 kb on - strand, within SGL_RS15800at 2995.838 kb on - strandat 2995.840 kb on - strandat 2995.912 kb on + strandat 2995.989 kb on + strand, within SGL_RS15805at 2996.016 kb on + strand, within SGL_RS15805at 2996.125 kb on + strand, within SGL_RS15805at 2996.274 kb on + strand, within SGL_RS15805at 2996.323 kb on + strand, within SGL_RS15805at 2996.330 kb on - strand, within SGL_RS15805at 2996.463 kb on + strand, within SGL_RS15805at 2996.471 kb on - strand, within SGL_RS15805at 2996.571 kb on + strandat 2996.581 kb on - strandat 2996.618 kb on + strandat 2996.662 kb on - strandat 2996.845 kb on - strand, within SGL_RS15810at 2996.976 kb on + strand, within SGL_RS15810at 2997.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,995,125 - SGL_RS15800 0.61 +0.9
2,995,277 - SGL_RS15800 0.71 +1.1
2,995,296 + SGL_RS15800 0.72 -0.2
2,995,304 - SGL_RS15800 0.73 -0.0
2,995,524 - SGL_RS15800 0.87 -0.3
2,995,838 - -0.2
2,995,840 - +0.6
2,995,912 + +2.8
2,995,989 + SGL_RS15805 0.11 +3.6
2,996,016 + SGL_RS15805 0.15 +3.6
2,996,125 + SGL_RS15805 0.30 +3.3
2,996,274 + SGL_RS15805 0.50 +3.7
2,996,323 + SGL_RS15805 0.57 +3.9
2,996,330 - SGL_RS15805 0.58 +3.3
2,996,463 + SGL_RS15805 0.76 +3.6
2,996,471 - SGL_RS15805 0.78 +4.6
2,996,571 + +4.1
2,996,581 - +3.5
2,996,618 + +0.6
2,996,662 - +0.9
2,996,845 - SGL_RS15810 0.20 -0.1
2,996,976 + SGL_RS15810 0.38 -0.9
2,997,626 - +0.2

Or see this region's nucleotide sequence