Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15310

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15300 and SGL_RS15305 are separated by 80 nucleotidesSGL_RS15305 and SGL_RS15310 are separated by 182 nucleotidesSGL_RS15310 and SGL_RS15315 are separated by 371 nucleotides SGL_RS15300: SGL_RS15300 - hypothetical protein, at 2,883,920 to 2,884,276 _RS15300 SGL_RS15305: SGL_RS15305 - ribonuclease HI, at 2,884,357 to 2,884,839 _RS15305 SGL_RS15310: SGL_RS15310 - response regulator transcription factor, at 2,885,022 to 2,885,810 _RS15310 SGL_RS15315: SGL_RS15315 - 30S ribosomal protein S12 methylthiotransferase RimO, at 2,886,182 to 2,887,513 _RS15315 Position (kb) 2885 2886Strain fitness (log2 ratio) -2 -1 0 1 2at 2884.095 kb on - strand, within SGL_RS15300at 2884.136 kb on - strand, within SGL_RS15300at 2884.313 kb on - strandat 2884.313 kb on - strandat 2884.333 kb on + strandat 2884.334 kb on + strandat 2884.341 kb on - strandat 2884.383 kb on + strandat 2884.401 kb on - strandat 2884.420 kb on - strand, within SGL_RS15305at 2884.459 kb on - strand, within SGL_RS15305at 2884.701 kb on + strand, within SGL_RS15305at 2884.731 kb on + strand, within SGL_RS15305at 2885.075 kb on + strandat 2885.075 kb on + strandat 2885.081 kb on - strandat 2885.083 kb on - strandat 2885.226 kb on - strand, within SGL_RS15310at 2885.261 kb on - strand, within SGL_RS15310at 2885.263 kb on + strand, within SGL_RS15310at 2885.263 kb on + strand, within SGL_RS15310at 2885.268 kb on + strand, within SGL_RS15310at 2885.270 kb on + strand, within SGL_RS15310at 2885.285 kb on - strand, within SGL_RS15310at 2885.378 kb on - strand, within SGL_RS15310at 2885.428 kb on + strand, within SGL_RS15310at 2885.431 kb on - strand, within SGL_RS15310at 2885.435 kb on + strand, within SGL_RS15310at 2885.445 kb on - strand, within SGL_RS15310at 2885.575 kb on + strand, within SGL_RS15310at 2885.787 kb on - strandat 2885.833 kb on + strandat 2885.949 kb on - strandat 2885.993 kb on - strandat 2886.000 kb on + strandat 2886.256 kb on + strandat 2886.328 kb on - strand, within SGL_RS15315at 2886.361 kb on + strand, within SGL_RS15315at 2886.369 kb on + strand, within SGL_RS15315at 2886.538 kb on + strand, within SGL_RS15315at 2886.747 kb on + strand, within SGL_RS15315

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,884,095 - SGL_RS15300 0.49 +0.1
2,884,136 - SGL_RS15300 0.61 +0.2
2,884,313 - +0.2
2,884,313 - -0.1
2,884,333 + +0.4
2,884,334 + +0.0
2,884,341 - +0.0
2,884,383 + -0.4
2,884,401 - -1.5
2,884,420 - SGL_RS15305 0.13 -1.3
2,884,459 - SGL_RS15305 0.21 -1.3
2,884,701 + SGL_RS15305 0.71 -1.1
2,884,731 + SGL_RS15305 0.77 -1.6
2,885,075 + +1.4
2,885,075 + +1.1
2,885,081 - +2.4
2,885,083 - +2.1
2,885,226 - SGL_RS15310 0.26 +2.2
2,885,261 - SGL_RS15310 0.30 +2.4
2,885,263 + SGL_RS15310 0.31 +2.6
2,885,263 + SGL_RS15310 0.31 +2.5
2,885,268 + SGL_RS15310 0.31 +2.4
2,885,270 + SGL_RS15310 0.31 +2.4
2,885,285 - SGL_RS15310 0.33 +2.4
2,885,378 - SGL_RS15310 0.45 +2.6
2,885,428 + SGL_RS15310 0.51 +2.5
2,885,431 - SGL_RS15310 0.52 +2.5
2,885,435 + SGL_RS15310 0.52 +2.4
2,885,445 - SGL_RS15310 0.54 +2.3
2,885,575 + SGL_RS15310 0.70 +1.6
2,885,787 - +2.7
2,885,833 + -0.4
2,885,949 - -0.1
2,885,993 - -0.1
2,886,000 + +0.1
2,886,256 + -1.4
2,886,328 - SGL_RS15315 0.11 -1.5
2,886,361 + SGL_RS15315 0.13 -1.8
2,886,369 + SGL_RS15315 0.14 -1.5
2,886,538 + SGL_RS15315 0.27 -2.6
2,886,747 + SGL_RS15315 0.42 -1.8

Or see this region's nucleotide sequence