Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15300 and SGL_RS15305 are separated by 80 nucleotides SGL_RS15305 and SGL_RS15310 are separated by 182 nucleotides SGL_RS15310 and SGL_RS15315 are separated by 371 nucleotides
SGL_RS15300: SGL_RS15300 - hypothetical protein, at 2,883,920 to 2,884,276
_RS15300
SGL_RS15305: SGL_RS15305 - ribonuclease HI, at 2,884,357 to 2,884,839
_RS15305
SGL_RS15310: SGL_RS15310 - response regulator transcription factor, at 2,885,022 to 2,885,810
_RS15310
SGL_RS15315: SGL_RS15315 - 30S ribosomal protein S12 methylthiotransferase RimO, at 2,886,182 to 2,887,513
_RS15315
Position (kb)
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2884.095 kb on - strand, within SGL_RS15300 at 2884.136 kb on - strand, within SGL_RS15300 at 2884.313 kb on - strand at 2884.313 kb on - strand at 2884.333 kb on + strand at 2884.334 kb on + strand at 2884.341 kb on - strand at 2884.383 kb on + strand at 2884.401 kb on - strand at 2884.420 kb on - strand, within SGL_RS15305 at 2884.459 kb on - strand, within SGL_RS15305 at 2884.701 kb on + strand, within SGL_RS15305 at 2884.731 kb on + strand, within SGL_RS15305 at 2885.075 kb on + strand at 2885.075 kb on + strand at 2885.081 kb on - strand at 2885.083 kb on - strand at 2885.226 kb on - strand, within SGL_RS15310 at 2885.261 kb on - strand, within SGL_RS15310 at 2885.263 kb on + strand, within SGL_RS15310 at 2885.263 kb on + strand, within SGL_RS15310 at 2885.268 kb on + strand, within SGL_RS15310 at 2885.270 kb on + strand, within SGL_RS15310 at 2885.285 kb on - strand, within SGL_RS15310 at 2885.378 kb on - strand, within SGL_RS15310 at 2885.428 kb on + strand, within SGL_RS15310 at 2885.431 kb on - strand, within SGL_RS15310 at 2885.435 kb on + strand, within SGL_RS15310 at 2885.445 kb on - strand, within SGL_RS15310 at 2885.575 kb on + strand, within SGL_RS15310 at 2885.787 kb on - strand at 2885.833 kb on + strand at 2885.949 kb on - strand at 2885.993 kb on - strand at 2886.000 kb on + strand at 2886.256 kb on + strand at 2886.328 kb on - strand, within SGL_RS15315 at 2886.361 kb on + strand, within SGL_RS15315 at 2886.369 kb on + strand, within SGL_RS15315 at 2886.538 kb on + strand, within SGL_RS15315 at 2886.747 kb on + strand, within SGL_RS15315
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,884,095 - SGL_RS15300 0.49 +0.1 2,884,136 - SGL_RS15300 0.61 +0.2 2,884,313 - +0.2 2,884,313 - -0.1 2,884,333 + +0.4 2,884,334 + +0.0 2,884,341 - +0.0 2,884,383 + -0.4 2,884,401 - -1.5 2,884,420 - SGL_RS15305 0.13 -1.3 2,884,459 - SGL_RS15305 0.21 -1.3 2,884,701 + SGL_RS15305 0.71 -1.1 2,884,731 + SGL_RS15305 0.77 -1.6 2,885,075 + +1.4 2,885,075 + +1.1 2,885,081 - +2.4 2,885,083 - +2.1 2,885,226 - SGL_RS15310 0.26 +2.2 2,885,261 - SGL_RS15310 0.30 +2.4 2,885,263 + SGL_RS15310 0.31 +2.6 2,885,263 + SGL_RS15310 0.31 +2.5 2,885,268 + SGL_RS15310 0.31 +2.4 2,885,270 + SGL_RS15310 0.31 +2.4 2,885,285 - SGL_RS15310 0.33 +2.4 2,885,378 - SGL_RS15310 0.45 +2.6 2,885,428 + SGL_RS15310 0.51 +2.5 2,885,431 - SGL_RS15310 0.52 +2.5 2,885,435 + SGL_RS15310 0.52 +2.4 2,885,445 - SGL_RS15310 0.54 +2.3 2,885,575 + SGL_RS15310 0.70 +1.6 2,885,787 - +2.7 2,885,833 + -0.4 2,885,949 - -0.1 2,885,993 - -0.1 2,886,000 + +0.1 2,886,256 + -1.4 2,886,328 - SGL_RS15315 0.11 -1.5 2,886,361 + SGL_RS15315 0.13 -1.8 2,886,369 + SGL_RS15315 0.14 -1.5 2,886,538 + SGL_RS15315 0.27 -2.6 2,886,747 + SGL_RS15315 0.42 -1.8
Or see this region's nucleotide sequence