Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15215

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15205 and SGL_RS15210 are separated by 166 nucleotidesSGL_RS15210 and SGL_RS15215 are separated by 163 nucleotidesSGL_RS15215 and SGL_RS15220 are separated by 61 nucleotides SGL_RS15205: SGL_RS15205 - succinate dehydrogenase iron-sulfur subunit, at 2,861,101 to 2,861,838 _RS15205 SGL_RS15210: SGL_RS15210 - AbrB family transcriptional regulator, at 2,862,005 to 2,862,394 _RS15210 SGL_RS15215: SGL_RS15215 - RrF2 family transcriptional regulator, at 2,862,558 to 2,863,031 _RS15215 SGL_RS15220: SGL_RS15220 - diguanylate cyclase, at 2,863,093 to 2,866,923 _RS15220 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -1 0 1 2at 2861.616 kb on + strand, within SGL_RS15205at 2861.626 kb on + strand, within SGL_RS15205at 2861.626 kb on + strand, within SGL_RS15205at 2861.730 kb on + strand, within SGL_RS15205at 2862.572 kb on + strandat 2862.706 kb on - strand, within SGL_RS15215at 2862.890 kb on + strand, within SGL_RS15215at 2863.148 kb on - strandat 2863.161 kb on - strandat 2863.176 kb on + strandat 2863.190 kb on + strandat 2863.190 kb on + strandat 2863.237 kb on - strandat 2863.390 kb on - strandat 2863.519 kb on - strand, within SGL_RS15220at 2863.526 kb on + strand, within SGL_RS15220at 2863.544 kb on - strand, within SGL_RS15220at 2863.688 kb on - strand, within SGL_RS15220at 2863.859 kb on - strand, within SGL_RS15220at 2863.859 kb on - strand, within SGL_RS15220at 2863.887 kb on + strand, within SGL_RS15220at 2864.004 kb on + strand, within SGL_RS15220at 2864.018 kb on - strand, within SGL_RS15220

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,861,616 + SGL_RS15205 0.70 +0.3
2,861,626 + SGL_RS15205 0.71 -0.6
2,861,626 + SGL_RS15205 0.71 -0.2
2,861,730 + SGL_RS15205 0.85 -0.4
2,862,572 + -0.1
2,862,706 - SGL_RS15215 0.31 +1.8
2,862,890 + SGL_RS15215 0.70 +0.2
2,863,148 - +1.6
2,863,161 - +0.6
2,863,176 + +0.4
2,863,190 + +1.0
2,863,190 + -0.1
2,863,237 - +1.1
2,863,390 - +0.6
2,863,519 - SGL_RS15220 0.11 +0.7
2,863,526 + SGL_RS15220 0.11 +0.8
2,863,544 - SGL_RS15220 0.12 +0.7
2,863,688 - SGL_RS15220 0.16 +1.3
2,863,859 - SGL_RS15220 0.20 +0.9
2,863,859 - SGL_RS15220 0.20 +0.6
2,863,887 + SGL_RS15220 0.21 -0.1
2,864,004 + SGL_RS15220 0.24 +0.7
2,864,018 - SGL_RS15220 0.24 +0.5

Or see this region's nucleotide sequence