Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15030

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15020 and SGL_RS15025 are separated by 126 nucleotidesSGL_RS15025 and SGL_RS15030 are separated by 16 nucleotidesSGL_RS15030 and SGL_RS15035 are separated by 245 nucleotidesSGL_RS15035 and SGL_RS15040 are separated by 124 nucleotides SGL_RS15020: SGL_RS15020 - cytochrome P450, at 2,817,862 to 2,819,196 _RS15020 SGL_RS15025: SGL_RS15025 - DUF2854 domain-containing protein, at 2,819,323 to 2,819,877 _RS15025 SGL_RS15030: SGL_RS15030 - acetate--CoA ligase, at 2,819,894 to 2,821,855 _RS15030 SGL_RS15035: SGL_RS15035 - hypothetical protein, at 2,822,101 to 2,822,454 _RS15035 SGL_RS15040: SGL_RS15040 - acyl-CoA desaturase, at 2,822,579 to 2,823,535 _RS15040 Position (kb) 2819 2820 2821 2822Strain fitness (log2 ratio) -1 0 1at 2818.972 kb on - strand, within SGL_RS15020at 2819.124 kb on - strandat 2819.406 kb on + strand, within SGL_RS15025at 2819.425 kb on - strand, within SGL_RS15025at 2819.487 kb on + strand, within SGL_RS15025at 2819.675 kb on + strand, within SGL_RS15025at 2819.737 kb on + strand, within SGL_RS15025at 2819.899 kb on - strandat 2819.899 kb on - strandat 2819.899 kb on - strandat 2819.902 kb on + strandat 2819.902 kb on + strandat 2819.902 kb on + strandat 2820.120 kb on + strand, within SGL_RS15030at 2820.120 kb on + strand, within SGL_RS15030at 2820.128 kb on - strand, within SGL_RS15030at 2820.341 kb on + strand, within SGL_RS15030at 2820.412 kb on - strand, within SGL_RS15030at 2820.493 kb on - strand, within SGL_RS15030at 2820.555 kb on + strand, within SGL_RS15030at 2820.558 kb on - strand, within SGL_RS15030at 2820.568 kb on - strand, within SGL_RS15030at 2820.687 kb on + strand, within SGL_RS15030at 2820.757 kb on + strand, within SGL_RS15030at 2820.798 kb on - strand, within SGL_RS15030at 2820.839 kb on + strand, within SGL_RS15030at 2820.878 kb on - strand, within SGL_RS15030at 2820.878 kb on - strand, within SGL_RS15030at 2820.884 kb on + strand, within SGL_RS15030at 2820.951 kb on + strand, within SGL_RS15030at 2820.951 kb on + strand, within SGL_RS15030at 2821.010 kb on + strand, within SGL_RS15030at 2821.010 kb on + strand, within SGL_RS15030at 2821.011 kb on + strand, within SGL_RS15030at 2821.079 kb on + strand, within SGL_RS15030at 2821.087 kb on - strand, within SGL_RS15030at 2821.105 kb on - strand, within SGL_RS15030at 2821.224 kb on + strand, within SGL_RS15030at 2821.224 kb on + strand, within SGL_RS15030at 2821.351 kb on + strand, within SGL_RS15030at 2821.359 kb on - strand, within SGL_RS15030at 2821.364 kb on - strand, within SGL_RS15030at 2821.431 kb on - strand, within SGL_RS15030at 2821.512 kb on - strand, within SGL_RS15030at 2821.693 kb on - strandat 2821.760 kb on + strandat 2821.837 kb on + strandat 2821.854 kb on - strandat 2821.948 kb on - strandat 2821.956 kb on + strandat 2821.959 kb on + strandat 2821.971 kb on - strandat 2822.028 kb on - strandat 2822.066 kb on - strandat 2822.069 kb on + strandat 2822.153 kb on + strand, within SGL_RS15035at 2822.309 kb on + strand, within SGL_RS15035

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,818,972 - SGL_RS15020 0.83 +0.0
2,819,124 - +0.0
2,819,406 + SGL_RS15025 0.15 -0.5
2,819,425 - SGL_RS15025 0.18 -0.3
2,819,487 + SGL_RS15025 0.30 -0.3
2,819,675 + SGL_RS15025 0.63 -0.3
2,819,737 + SGL_RS15025 0.75 +0.1
2,819,899 - -0.4
2,819,899 - +0.4
2,819,899 - +0.2
2,819,902 + +0.0
2,819,902 + -0.0
2,819,902 + +0.6
2,820,120 + SGL_RS15030 0.12 +0.9
2,820,120 + SGL_RS15030 0.12 +1.1
2,820,128 - SGL_RS15030 0.12 +1.3
2,820,341 + SGL_RS15030 0.23 +0.9
2,820,412 - SGL_RS15030 0.26 +1.2
2,820,493 - SGL_RS15030 0.31 +1.2
2,820,555 + SGL_RS15030 0.34 +1.1
2,820,558 - SGL_RS15030 0.34 +0.9
2,820,568 - SGL_RS15030 0.34 +0.8
2,820,687 + SGL_RS15030 0.40 +1.0
2,820,757 + SGL_RS15030 0.44 +1.4
2,820,798 - SGL_RS15030 0.46 +1.2
2,820,839 + SGL_RS15030 0.48 +1.5
2,820,878 - SGL_RS15030 0.50 +1.0
2,820,878 - SGL_RS15030 0.50 +0.9
2,820,884 + SGL_RS15030 0.50 +1.0
2,820,951 + SGL_RS15030 0.54 +0.9
2,820,951 + SGL_RS15030 0.54 +1.4
2,821,010 + SGL_RS15030 0.57 +0.6
2,821,010 + SGL_RS15030 0.57 +0.9
2,821,011 + SGL_RS15030 0.57 +0.6
2,821,079 + SGL_RS15030 0.60 -0.3
2,821,087 - SGL_RS15030 0.61 +1.4
2,821,105 - SGL_RS15030 0.62 +1.1
2,821,224 + SGL_RS15030 0.68 +0.6
2,821,224 + SGL_RS15030 0.68 +1.2
2,821,351 + SGL_RS15030 0.74 +1.0
2,821,359 - SGL_RS15030 0.75 -0.3
2,821,364 - SGL_RS15030 0.75 +0.6
2,821,431 - SGL_RS15030 0.78 +1.2
2,821,512 - SGL_RS15030 0.82 +1.2
2,821,693 - +1.1
2,821,760 + +1.1
2,821,837 + +1.4
2,821,854 - +0.9
2,821,948 - -0.2
2,821,956 + +0.2
2,821,959 + -0.4
2,821,971 - -0.8
2,822,028 - -0.0
2,822,066 - +0.5
2,822,069 + -0.3
2,822,153 + SGL_RS15035 0.15 -0.4
2,822,309 + SGL_RS15035 0.59 +0.1

Or see this region's nucleotide sequence