Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14780

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14775 and SGL_RS14780 are separated by 223 nucleotidesSGL_RS14780 and SGL_RS14785 are separated by 15 nucleotides SGL_RS14775: SGL_RS14775 - ferredoxin--nitrite reductase, at 2,769,125 to 2,770,633 _RS14775 SGL_RS14780: SGL_RS14780 - cyanase, at 2,770,857 to 2,771,306 _RS14780 SGL_RS14785: SGL_RS14785 - molybdopterin molybdotransferase MoeA, at 2,771,322 to 2,772,494 _RS14785 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -1 0 1 2 3at 2770.376 kb on + strand, within SGL_RS14775at 2770.378 kb on + strand, within SGL_RS14775at 2770.674 kb on - strandat 2770.731 kb on + strandat 2771.032 kb on + strand, within SGL_RS14780at 2771.040 kb on - strand, within SGL_RS14780at 2771.040 kb on - strand, within SGL_RS14780at 2771.040 kb on - strand, within SGL_RS14780at 2771.040 kb on - strand, within SGL_RS14780at 2771.047 kb on + strand, within SGL_RS14780at 2771.078 kb on + strand, within SGL_RS14780at 2771.092 kb on - strand, within SGL_RS14780at 2771.144 kb on + strand, within SGL_RS14780at 2771.152 kb on - strand, within SGL_RS14780at 2771.251 kb on - strand, within SGL_RS14780at 2771.494 kb on + strand, within SGL_RS14785

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,770,376 + SGL_RS14775 0.83 -0.2
2,770,378 + SGL_RS14775 0.83 +1.4
2,770,674 - +2.1
2,770,731 + +1.4
2,771,032 + SGL_RS14780 0.39 -0.1
2,771,040 - SGL_RS14780 0.41 +2.2
2,771,040 - SGL_RS14780 0.41 +2.1
2,771,040 - SGL_RS14780 0.41 +2.3
2,771,040 - SGL_RS14780 0.41 +2.4
2,771,047 + SGL_RS14780 0.42 +3.7
2,771,078 + SGL_RS14780 0.49 +1.6
2,771,092 - SGL_RS14780 0.52 +2.1
2,771,144 + SGL_RS14780 0.64 +0.7
2,771,152 - SGL_RS14780 0.66 +1.4
2,771,251 - SGL_RS14780 0.88 +2.8
2,771,494 + SGL_RS14785 0.15 +2.2

Or see this region's nucleotide sequence