Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14695

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14690 and SGL_RS14695 are separated by 88 nucleotidesSGL_RS14695 and SGL_RS14700 are separated by 71 nucleotides SGL_RS14690: SGL_RS14690 - HAMP domain-containing sensor histidine kinase, at 2,747,604 to 2,748,857 _RS14690 SGL_RS14695: SGL_RS14695 - DUF2839 domain-containing protein, at 2,748,946 to 2,749,158 _RS14695 SGL_RS14700: SGL_RS14700 - GNAT family N-acetyltransferase, at 2,749,230 to 2,750,441 _RS14700 Position (kb) 2748 2749 2750Strain fitness (log2 ratio) -1 0 1at 2748.238 kb on + strand, within SGL_RS14690at 2748.720 kb on + strand, within SGL_RS14690at 2748.730 kb on - strand, within SGL_RS14690at 2748.962 kb on + strandat 2748.970 kb on - strand, within SGL_RS14695at 2749.006 kb on + strand, within SGL_RS14695at 2749.088 kb on + strand, within SGL_RS14695at 2749.101 kb on + strand, within SGL_RS14695at 2749.174 kb on + strandat 2749.182 kb on - strandat 2749.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,748,238 + SGL_RS14690 0.51 +0.9
2,748,720 + SGL_RS14690 0.89 +0.8
2,748,730 - SGL_RS14690 0.90 +0.4
2,748,962 + +1.0
2,748,970 - SGL_RS14695 0.11 +1.1
2,749,006 + SGL_RS14695 0.28 +1.2
2,749,088 + SGL_RS14695 0.67 +1.3
2,749,101 + SGL_RS14695 0.73 +1.3
2,749,174 + -0.4
2,749,182 - +0.8
2,749,182 - -0.1

Or see this region's nucleotide sequence