Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14690

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14685 and SGL_RS14690 are separated by 269 nucleotidesSGL_RS14690 and SGL_RS14695 are separated by 88 nucleotidesSGL_RS14695 and SGL_RS14700 are separated by 71 nucleotides SGL_RS14685: SGL_RS14685 - hypothetical protein, at 2,746,288 to 2,747,334 _RS14685 SGL_RS14690: SGL_RS14690 - HAMP domain-containing sensor histidine kinase, at 2,747,604 to 2,748,857 _RS14690 SGL_RS14695: SGL_RS14695 - DUF2839 domain-containing protein, at 2,748,946 to 2,749,158 _RS14695 SGL_RS14700: SGL_RS14700 - GNAT family N-acetyltransferase, at 2,749,230 to 2,750,441 _RS14700 Position (kb) 2747 2748 2749Strain fitness (log2 ratio) -1 0 1at 2746.799 kb on - strand, within SGL_RS14685at 2746.833 kb on + strand, within SGL_RS14685at 2746.961 kb on + strand, within SGL_RS14685at 2747.336 kb on - strandat 2747.618 kb on + strandat 2747.653 kb on + strandat 2747.732 kb on - strand, within SGL_RS14690at 2747.786 kb on - strand, within SGL_RS14690at 2747.804 kb on + strand, within SGL_RS14690at 2747.812 kb on - strand, within SGL_RS14690at 2747.869 kb on - strand, within SGL_RS14690at 2747.886 kb on + strand, within SGL_RS14690at 2748.238 kb on + strand, within SGL_RS14690at 2748.720 kb on + strand, within SGL_RS14690at 2748.730 kb on - strand, within SGL_RS14690at 2748.962 kb on + strandat 2748.970 kb on - strand, within SGL_RS14695at 2749.006 kb on + strand, within SGL_RS14695at 2749.088 kb on + strand, within SGL_RS14695at 2749.101 kb on + strand, within SGL_RS14695at 2749.174 kb on + strandat 2749.182 kb on - strandat 2749.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,746,799 - SGL_RS14685 0.49 +0.2
2,746,833 + SGL_RS14685 0.52 +0.1
2,746,961 + SGL_RS14685 0.64 -0.3
2,747,336 - -0.3
2,747,618 + +0.1
2,747,653 + +0.9
2,747,732 - SGL_RS14690 0.10 +0.6
2,747,786 - SGL_RS14690 0.15 +1.2
2,747,804 + SGL_RS14690 0.16 +1.2
2,747,812 - SGL_RS14690 0.17 +1.0
2,747,869 - SGL_RS14690 0.21 +1.4
2,747,886 + SGL_RS14690 0.22 +0.1
2,748,238 + SGL_RS14690 0.51 +0.9
2,748,720 + SGL_RS14690 0.89 +0.8
2,748,730 - SGL_RS14690 0.90 +0.4
2,748,962 + +1.0
2,748,970 - SGL_RS14695 0.11 +1.1
2,749,006 + SGL_RS14695 0.28 +1.2
2,749,088 + SGL_RS14695 0.67 +1.3
2,749,101 + SGL_RS14695 0.73 +1.3
2,749,174 + -0.4
2,749,182 - +0.8
2,749,182 - -0.1

Or see this region's nucleotide sequence