Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14600

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14595 and SGL_RS14600 are separated by 103 nucleotidesSGL_RS14600 and SGL_RS14605 are separated by 616 nucleotides SGL_RS14595: SGL_RS14595 - phospholipase D-like domain-containing protein, at 2,727,047 to 2,728,708 _RS14595 SGL_RS14600: SGL_RS14600 - DUF4912 domain-containing protein, at 2,728,812 to 2,730,071 _RS14600 SGL_RS14605: SGL_RS14605 - ergothioneine biosynthesis protein EgtC, at 2,730,688 to 2,731,563 _RS14605 Position (kb) 2728 2729 2730 2731Strain fitness (log2 ratio) -1 0 1at 2727.814 kb on + strand, within SGL_RS14595at 2727.822 kb on - strand, within SGL_RS14595at 2727.829 kb on + strand, within SGL_RS14595at 2727.861 kb on - strand, within SGL_RS14595at 2728.178 kb on - strand, within SGL_RS14595at 2728.242 kb on - strand, within SGL_RS14595at 2728.320 kb on - strand, within SGL_RS14595at 2728.399 kb on + strand, within SGL_RS14595at 2728.436 kb on + strand, within SGL_RS14595at 2728.468 kb on - strand, within SGL_RS14595at 2728.552 kb on - strandat 2728.640 kb on + strandat 2728.900 kb on - strandat 2729.139 kb on + strand, within SGL_RS14600at 2729.227 kb on - strand, within SGL_RS14600at 2729.261 kb on + strand, within SGL_RS14600at 2729.328 kb on + strand, within SGL_RS14600at 2729.339 kb on - strand, within SGL_RS14600at 2729.424 kb on + strand, within SGL_RS14600at 2729.530 kb on - strand, within SGL_RS14600at 2729.650 kb on - strand, within SGL_RS14600at 2729.673 kb on - strand, within SGL_RS14600at 2729.678 kb on - strand, within SGL_RS14600at 2729.693 kb on + strand, within SGL_RS14600at 2729.721 kb on - strand, within SGL_RS14600at 2729.825 kb on - strand, within SGL_RS14600at 2729.849 kb on - strand, within SGL_RS14600at 2730.006 kb on + strandat 2730.233 kb on + strandat 2730.241 kb on - strandat 2730.241 kb on - strandat 2730.622 kb on + strandat 2730.875 kb on - strand, within SGL_RS14605at 2730.932 kb on - strand, within SGL_RS14605at 2730.935 kb on + strand, within SGL_RS14605at 2731.016 kb on - strand, within SGL_RS14605

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,727,814 + SGL_RS14595 0.46 +0.6
2,727,822 - SGL_RS14595 0.47 -0.1
2,727,829 + SGL_RS14595 0.47 +0.3
2,727,861 - SGL_RS14595 0.49 +0.7
2,728,178 - SGL_RS14595 0.68 +0.2
2,728,242 - SGL_RS14595 0.72 +0.2
2,728,320 - SGL_RS14595 0.77 -0.7
2,728,399 + SGL_RS14595 0.81 +0.3
2,728,436 + SGL_RS14595 0.84 +0.5
2,728,468 - SGL_RS14595 0.85 +0.4
2,728,552 - -0.1
2,728,640 + +0.5
2,728,900 - +0.3
2,729,139 + SGL_RS14600 0.26 +1.1
2,729,227 - SGL_RS14600 0.33 +1.1
2,729,261 + SGL_RS14600 0.36 +0.9
2,729,328 + SGL_RS14600 0.41 +0.6
2,729,339 - SGL_RS14600 0.42 +0.5
2,729,424 + SGL_RS14600 0.49 +0.6
2,729,530 - SGL_RS14600 0.57 +0.8
2,729,650 - SGL_RS14600 0.67 +0.4
2,729,673 - SGL_RS14600 0.68 +1.2
2,729,678 - SGL_RS14600 0.69 +1.2
2,729,693 + SGL_RS14600 0.70 +0.8
2,729,721 - SGL_RS14600 0.72 +1.1
2,729,825 - SGL_RS14600 0.80 +1.0
2,729,849 - SGL_RS14600 0.82 +1.0
2,730,006 + +0.9
2,730,233 + +0.1
2,730,241 - +0.8
2,730,241 - +0.8
2,730,622 + +0.5
2,730,875 - SGL_RS14605 0.21 -0.7
2,730,932 - SGL_RS14605 0.28 -1.4
2,730,935 + SGL_RS14605 0.28 -0.5
2,731,016 - SGL_RS14605 0.37 +0.0

Or see this region's nucleotide sequence