Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14575

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14565 and SGL_RS14570 are separated by 36 nucleotidesSGL_RS14570 and SGL_RS14575 are separated by 228 nucleotidesSGL_RS14575 and SGL_RS14580 are separated by 222 nucleotidesSGL_RS14580 and SGL_RS14585 are separated by 55 nucleotides SGL_RS14565: SGL_RS14565 - SpoIID/LytB domain-containing protein, at 2,722,431 to 2,724,038 _RS14565 SGL_RS14570: SGL_RS14570 - rhodanese-like domain-containing protein, at 2,724,075 to 2,724,419 _RS14570 SGL_RS14575: SGL_RS14575 - RNA-binding protein, at 2,724,648 to 2,725,103 _RS14575 SGL_RS14580: SGL_RS14580 - ribose-5-phosphate isomerase RpiA, at 2,725,326 to 2,726,033 _RS14580 SGL_RS14585: SGL_RS14585 - TolB family protein, at 2,726,089 to 2,726,640 _RS14585 Position (kb) 2724 2725 2726Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2723.651 kb on + strand, within SGL_RS14565at 2723.794 kb on + strand, within SGL_RS14565at 2723.808 kb on + strand, within SGL_RS14565at 2723.923 kb on + strandat 2723.931 kb on - strandat 2724.139 kb on - strand, within SGL_RS14570at 2724.318 kb on + strand, within SGL_RS14570at 2724.318 kb on + strand, within SGL_RS14570at 2724.511 kb on + strandat 2724.771 kb on + strand, within SGL_RS14575at 2725.059 kb on + strandat 2725.129 kb on - strandat 2725.529 kb on - strand, within SGL_RS14580at 2725.652 kb on - strand, within SGL_RS14580at 2726.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,723,651 + SGL_RS14565 0.76 -2.3
2,723,794 + SGL_RS14565 0.85 +0.3
2,723,808 + SGL_RS14565 0.86 -1.6
2,723,923 + -1.7
2,723,931 - -2.6
2,724,139 - SGL_RS14570 0.19 +0.3
2,724,318 + SGL_RS14570 0.70 +0.3
2,724,318 + SGL_RS14570 0.70 +1.9
2,724,511 + +4.8
2,724,771 + SGL_RS14575 0.27 +4.0
2,725,059 + +4.2
2,725,129 - +0.7
2,725,529 - SGL_RS14580 0.29 +0.4
2,725,652 - SGL_RS14580 0.46 -2.9
2,726,060 - +0.1

Or see this region's nucleotide sequence