Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14495

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14490 and SGL_RS14495 are separated by 749 nucleotidesSGL_RS14495 and SGL_RS14500 are separated by 558 nucleotides SGL_RS14490: SGL_RS14490 - hypothetical protein, at 2,705,678 to 2,705,983 _RS14490 SGL_RS14495: SGL_RS14495 - septal ring lytic transglycosylase RlpA family protein, at 2,706,733 to 2,707,698 _RS14495 SGL_RS14500: SGL_RS14500 - urea ABC transporter ATP-binding subunit UrtE, at 2,708,257 to 2,709,006 _RS14500 Position (kb) 2706 2707 2708Strain fitness (log2 ratio) -1 0 1 2at 2705.780 kb on + strand, within SGL_RS14490at 2705.788 kb on - strand, within SGL_RS14490at 2705.897 kb on - strand, within SGL_RS14490at 2705.977 kb on + strandat 2706.088 kb on + strandat 2706.189 kb on - strandat 2706.639 kb on - strandat 2706.641 kb on + strandat 2706.649 kb on - strandat 2706.649 kb on - strandat 2706.903 kb on - strand, within SGL_RS14495at 2707.001 kb on + strand, within SGL_RS14495at 2707.009 kb on - strand, within SGL_RS14495at 2707.066 kb on + strand, within SGL_RS14495at 2707.091 kb on + strand, within SGL_RS14495at 2707.099 kb on - strand, within SGL_RS14495at 2707.102 kb on - strand, within SGL_RS14495at 2707.298 kb on + strand, within SGL_RS14495at 2707.328 kb on + strand, within SGL_RS14495at 2707.350 kb on + strand, within SGL_RS14495at 2707.357 kb on + strand, within SGL_RS14495at 2707.447 kb on - strand, within SGL_RS14495at 2707.575 kb on - strand, within SGL_RS14495at 2707.668 kb on + strandat 2707.676 kb on - strandat 2707.678 kb on + strandat 2707.686 kb on - strandat 2707.733 kb on - strandat 2708.055 kb on + strandat 2708.231 kb on - strandat 2708.291 kb on - strandat 2708.513 kb on + strand, within SGL_RS14500at 2708.674 kb on + strand, within SGL_RS14500

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,705,780 + SGL_RS14490 0.33 +0.4
2,705,788 - SGL_RS14490 0.36 -0.6
2,705,897 - SGL_RS14490 0.72 -0.1
2,705,977 + +0.4
2,706,088 + -0.5
2,706,189 - +0.8
2,706,639 - +1.6
2,706,641 + +1.3
2,706,649 - +2.2
2,706,649 - +0.8
2,706,903 - SGL_RS14495 0.18 +1.5
2,707,001 + SGL_RS14495 0.28 +1.8
2,707,009 - SGL_RS14495 0.29 +1.7
2,707,066 + SGL_RS14495 0.34 +1.5
2,707,091 + SGL_RS14495 0.37 +1.5
2,707,099 - SGL_RS14495 0.38 +1.5
2,707,102 - SGL_RS14495 0.38 +1.6
2,707,298 + SGL_RS14495 0.58 +0.9
2,707,328 + SGL_RS14495 0.62 +1.1
2,707,350 + SGL_RS14495 0.64 +1.3
2,707,357 + SGL_RS14495 0.65 +1.4
2,707,447 - SGL_RS14495 0.74 +1.2
2,707,575 - SGL_RS14495 0.87 +1.0
2,707,668 + +0.1
2,707,676 - +1.3
2,707,678 + +1.0
2,707,686 - +1.1
2,707,733 - -0.3
2,708,055 + -0.3
2,708,231 - +0.0
2,708,291 - +0.1
2,708,513 + SGL_RS14500 0.34 -0.4
2,708,674 + SGL_RS14500 0.56 -0.0

Or see this region's nucleotide sequence