Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14475

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14465 and SGL_RS14470 are separated by 116 nucleotidesSGL_RS14470 and SGL_RS14475 are separated by 213 nucleotidesSGL_RS14475 and SGL_RS14480 are separated by 125 nucleotides SGL_RS14465: SGL_RS14465 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 2,698,258 to 2,699,145 _RS14465 SGL_RS14470: SGL_RS14470 - hypothetical protein, at 2,699,262 to 2,699,855 _RS14470 SGL_RS14475: SGL_RS14475 - alpha/beta hydrolase, at 2,700,069 to 2,700,818 _RS14475 SGL_RS14480: SGL_RS14480 - uroporphyrinogen-III C-methyltransferase, at 2,700,944 to 2,701,735 _RS14480 Position (kb) 2700 2701Strain fitness (log2 ratio) -1 0 1at 2699.156 kb on + strandat 2699.172 kb on - strandat 2699.214 kb on + strandat 2699.286 kb on - strandat 2699.287 kb on + strandat 2699.295 kb on - strandat 2699.350 kb on - strand, within SGL_RS14470at 2699.357 kb on + strand, within SGL_RS14470at 2699.630 kb on + strand, within SGL_RS14470at 2699.633 kb on - strand, within SGL_RS14470at 2699.742 kb on - strand, within SGL_RS14470at 2700.103 kb on + strandat 2700.189 kb on - strand, within SGL_RS14475at 2700.241 kb on + strand, within SGL_RS14475at 2700.596 kb on + strand, within SGL_RS14475at 2700.596 kb on + strand, within SGL_RS14475at 2700.807 kb on - strandat 2700.956 kb on + strandat 2701.126 kb on - strand, within SGL_RS14480at 2701.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,699,156 + -0.1
2,699,172 - -0.0
2,699,214 + -0.4
2,699,286 - -0.2
2,699,287 + +0.7
2,699,295 - +0.2
2,699,350 - SGL_RS14470 0.15 +0.5
2,699,357 + SGL_RS14470 0.16 +0.6
2,699,630 + SGL_RS14470 0.62 -0.5
2,699,633 - SGL_RS14470 0.62 -0.1
2,699,742 - SGL_RS14470 0.81 +0.2
2,700,103 + +0.2
2,700,189 - SGL_RS14475 0.16 -1.0
2,700,241 + SGL_RS14475 0.23 -0.4
2,700,596 + SGL_RS14475 0.70 +0.2
2,700,596 + SGL_RS14475 0.70 -1.0
2,700,807 - -0.5
2,700,956 + -0.0
2,701,126 - SGL_RS14480 0.23 -1.5
2,701,729 + -0.5

Or see this region's nucleotide sequence