Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14360

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14350 and SGL_RS14355 are separated by 10 nucleotidesSGL_RS14355 and SGL_RS14360 are separated by 511 nucleotidesSGL_RS14360 and SGL_RS14365 are separated by 384 nucleotides SGL_RS14350: SGL_RS14350 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 2,674,736 to 2,676,196 _RS14350 SGL_RS14355: SGL_RS14355 - hypothetical protein, at 2,676,207 to 2,676,425 _RS14355 SGL_RS14360: SGL_RS14360 - carbon-nitrogen hydrolase family protein, at 2,676,937 to 2,677,755 _RS14360 SGL_RS14365: SGL_RS14365 - methionine--tRNA ligase, at 2,678,140 to 2,679,738 _RS14365 Position (kb) 2676 2677 2678Strain fitness (log2 ratio) -2 -1 0 1 2at 2676.009 kb on + strand, within SGL_RS14350at 2676.134 kb on - strandat 2676.153 kb on - strandat 2676.153 kb on - strandat 2676.213 kb on - strandat 2676.670 kb on - strandat 2676.894 kb on - strandat 2676.900 kb on + strandat 2676.900 kb on + strandat 2676.908 kb on - strandat 2676.910 kb on + strandat 2676.992 kb on - strandat 2677.055 kb on - strand, within SGL_RS14360at 2677.088 kb on - strand, within SGL_RS14360at 2677.183 kb on + strand, within SGL_RS14360at 2677.200 kb on - strand, within SGL_RS14360at 2677.256 kb on - strand, within SGL_RS14360at 2677.420 kb on - strand, within SGL_RS14360at 2677.441 kb on + strand, within SGL_RS14360at 2677.462 kb on + strand, within SGL_RS14360at 2677.470 kb on - strand, within SGL_RS14360at 2677.532 kb on - strand, within SGL_RS14360at 2677.678 kb on + strandat 2677.707 kb on + strandat 2677.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,676,009 + SGL_RS14350 0.87 -1.1
2,676,134 - -2.2
2,676,153 - -1.4
2,676,153 - -0.6
2,676,213 - +0.1
2,676,670 - +0.0
2,676,894 - -0.1
2,676,900 + +1.8
2,676,900 + -0.1
2,676,908 - +0.1
2,676,910 + -0.2
2,676,992 - +1.7
2,677,055 - SGL_RS14360 0.14 +0.8
2,677,088 - SGL_RS14360 0.18 +1.4
2,677,183 + SGL_RS14360 0.30 +1.5
2,677,200 - SGL_RS14360 0.32 +0.8
2,677,256 - SGL_RS14360 0.39 +2.0
2,677,420 - SGL_RS14360 0.59 +1.0
2,677,441 + SGL_RS14360 0.62 +1.1
2,677,462 + SGL_RS14360 0.64 +0.9
2,677,470 - SGL_RS14360 0.65 +1.2
2,677,532 - SGL_RS14360 0.73 +0.6
2,677,678 + +0.6
2,677,707 + +0.5
2,677,852 - -1.5

Or see this region's nucleotide sequence