Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14280 and SGL_RS19475 are separated by 225 nucleotides SGL_RS19475 and SGL_RS14285 are separated by 54 nucleotides SGL_RS14285 and SGL_RS14290 are separated by 45 nucleotides SGL_RS14290 and SGL_RS14295 are separated by 49 nucleotides
SGL_RS14280: SGL_RS14280 - adenosylcobinamide-GDP ribazoletransferase, at 2,657,850 to 2,658,632
_RS14280
SGL_RS19475: SGL_RS19475 - hypothetical protein, at 2,658,858 to 2,659,025
_RS19475
SGL_RS14285: SGL_RS14285 - hypothetical protein, at 2,659,080 to 2,659,865
_RS14285
SGL_RS14290: SGL_RS14290 - glycine--tRNA ligase subunit alpha, at 2,659,911 to 2,660,804
_RS14290
SGL_RS14295: SGL_RS14295 - mechanosensitive ion channel, at 2,660,854 to 2,661,744
_RS14295
Position (kb)
2659
2660 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2658.118 kb on + strand, within SGL_RS14280 at 2658.197 kb on + strand, within SGL_RS14280 at 2658.324 kb on + strand, within SGL_RS14280 at 2658.332 kb on - strand, within SGL_RS14280 at 2658.510 kb on + strand, within SGL_RS14280 at 2658.696 kb on - strand at 2658.815 kb on - strand at 2658.816 kb on - strand at 2658.982 kb on + strand, within SGL_RS19475 at 2658.990 kb on - strand, within SGL_RS19475 at 2659.347 kb on + strand, within SGL_RS14285 at 2659.498 kb on - strand, within SGL_RS14285 at 2659.539 kb on + strand, within SGL_RS14285 at 2659.701 kb on - strand, within SGL_RS14285 at 2659.753 kb on + strand, within SGL_RS14285 at 2660.185 kb on + strand, within SGL_RS14290
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,658,118 + SGL_RS14280 0.34 -0.2 2,658,197 + SGL_RS14280 0.44 -1.5 2,658,324 + SGL_RS14280 0.61 -0.8 2,658,332 - SGL_RS14280 0.62 -1.2 2,658,510 + SGL_RS14280 0.84 -1.2 2,658,696 - +2.1 2,658,815 - +1.8 2,658,816 - +1.9 2,658,982 + SGL_RS19475 0.74 +0.8 2,658,990 - SGL_RS19475 0.79 +3.1 2,659,347 + SGL_RS14285 0.34 -0.8 2,659,498 - SGL_RS14285 0.53 -0.8 2,659,539 + SGL_RS14285 0.58 +2.1 2,659,701 - SGL_RS14285 0.79 -2.6 2,659,753 + SGL_RS14285 0.86 +3.3 2,660,185 + SGL_RS14290 0.31 -2.5
Or see this region's nucleotide sequence