Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13940

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13935 and SGL_RS13940 are separated by 48 nucleotidesSGL_RS13940 and SGL_RS13945 are separated by 233 nucleotides SGL_RS13935: SGL_RS13935 - AI-2E family transporter, at 2,585,489 to 2,586,523 _RS13935 SGL_RS13940: SGL_RS13940 - molecular chaperone DnaK, at 2,586,572 to 2,588,650 _RS13940 SGL_RS13945: SGL_RS13945 - nucleotide exchange factor GrpE, at 2,588,884 to 2,589,633 _RS13945 Position (kb) 2586 2587 2588 2589Strain fitness (log2 ratio) -1 0 1 2 3 4at 2585.663 kb on + strand, within SGL_RS13935at 2585.695 kb on - strand, within SGL_RS13935at 2585.804 kb on + strand, within SGL_RS13935at 2586.030 kb on - strand, within SGL_RS13935at 2586.168 kb on + strand, within SGL_RS13935at 2586.450 kb on + strandat 2586.583 kb on + strandat 2586.623 kb on + strandat 2586.671 kb on + strandat 2586.715 kb on + strandat 2586.803 kb on - strand, within SGL_RS13940at 2586.924 kb on + strand, within SGL_RS13940at 2586.968 kb on - strand, within SGL_RS13940at 2587.111 kb on - strand, within SGL_RS13940at 2587.191 kb on + strand, within SGL_RS13940at 2587.204 kb on - strand, within SGL_RS13940at 2587.290 kb on + strand, within SGL_RS13940at 2587.296 kb on + strand, within SGL_RS13940at 2587.323 kb on + strand, within SGL_RS13940at 2587.332 kb on - strand, within SGL_RS13940at 2587.416 kb on + strand, within SGL_RS13940at 2587.416 kb on + strand, within SGL_RS13940at 2587.450 kb on + strand, within SGL_RS13940at 2587.520 kb on + strand, within SGL_RS13940at 2587.537 kb on - strand, within SGL_RS13940at 2587.580 kb on + strand, within SGL_RS13940at 2587.636 kb on + strand, within SGL_RS13940at 2587.677 kb on + strand, within SGL_RS13940at 2587.725 kb on - strand, within SGL_RS13940at 2587.985 kb on + strand, within SGL_RS13940at 2588.182 kb on + strand, within SGL_RS13940at 2588.192 kb on + strand, within SGL_RS13940at 2588.333 kb on - strand, within SGL_RS13940at 2588.350 kb on - strand, within SGL_RS13940at 2588.358 kb on + strand, within SGL_RS13940at 2588.363 kb on + strand, within SGL_RS13940at 2588.379 kb on - strand, within SGL_RS13940at 2588.381 kb on + strand, within SGL_RS13940at 2588.381 kb on + strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.450 kb on + strandat 2588.792 kb on + strandat 2588.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,585,663 + SGL_RS13935 0.17 +0.4
2,585,695 - SGL_RS13935 0.20 -0.3
2,585,804 + SGL_RS13935 0.30 +0.1
2,586,030 - SGL_RS13935 0.52 +0.3
2,586,168 + SGL_RS13935 0.66 +0.4
2,586,450 + -0.4
2,586,583 + +2.0
2,586,623 + +2.1
2,586,671 + +2.3
2,586,715 + +2.1
2,586,803 - SGL_RS13940 0.11 +2.3
2,586,924 + SGL_RS13940 0.17 +2.2
2,586,968 - SGL_RS13940 0.19 +2.0
2,587,111 - SGL_RS13940 0.26 +2.0
2,587,191 + SGL_RS13940 0.30 +3.1
2,587,204 - SGL_RS13940 0.30 +2.2
2,587,290 + SGL_RS13940 0.35 +1.6
2,587,296 + SGL_RS13940 0.35 +2.6
2,587,323 + SGL_RS13940 0.36 +1.9
2,587,332 - SGL_RS13940 0.37 +2.3
2,587,416 + SGL_RS13940 0.41 +2.7
2,587,416 + SGL_RS13940 0.41 +2.6
2,587,450 + SGL_RS13940 0.42 +1.8
2,587,520 + SGL_RS13940 0.46 +2.2
2,587,537 - SGL_RS13940 0.46 +1.6
2,587,580 + SGL_RS13940 0.48 +2.3
2,587,636 + SGL_RS13940 0.51 +2.3
2,587,677 + SGL_RS13940 0.53 +2.3
2,587,725 - SGL_RS13940 0.55 +2.1
2,587,985 + SGL_RS13940 0.68 +2.2
2,588,182 + SGL_RS13940 0.77 +2.3
2,588,192 + SGL_RS13940 0.78 +2.3
2,588,333 - SGL_RS13940 0.85 +2.4
2,588,350 - SGL_RS13940 0.86 +2.8
2,588,358 + SGL_RS13940 0.86 +4.1
2,588,363 + SGL_RS13940 0.86 +2.2
2,588,379 - SGL_RS13940 0.87 +2.2
2,588,381 + SGL_RS13940 0.87 +2.3
2,588,381 + SGL_RS13940 0.87 +2.9
2,588,389 - SGL_RS13940 0.87 +2.6
2,588,389 - SGL_RS13940 0.87 +2.2
2,588,389 - SGL_RS13940 0.87 +1.7
2,588,450 + +2.4
2,588,792 + +0.8
2,588,902 - -1.2

Or see this region's nucleotide sequence