Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13895

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13890 and SGL_RS13895 are separated by 155 nucleotidesSGL_RS13895 and SGL_RS13900 are separated by 152 nucleotides SGL_RS13890: SGL_RS13890 - amino acid ABC transporter substrate-binding protein, at 2,579,308 to 2,580,135 _RS13890 SGL_RS13895: SGL_RS13895 - PipX family protein, at 2,580,291 to 2,580,557 _RS13895 SGL_RS13900: SGL_RS13900 - AI-2E family transporter, at 2,580,710 to 2,581,897 _RS13900 Position (kb) 2580 2581Strain fitness (log2 ratio) -2 -1 0 1 2at 2579.596 kb on + strand, within SGL_RS13890at 2579.730 kb on - strand, within SGL_RS13890at 2579.934 kb on - strand, within SGL_RS13890at 2579.953 kb on + strand, within SGL_RS13890at 2580.006 kb on + strand, within SGL_RS13890at 2580.043 kb on + strand, within SGL_RS13890at 2580.191 kb on - strandat 2580.332 kb on - strand, within SGL_RS13895at 2580.568 kb on + strandat 2580.601 kb on + strandat 2580.794 kb on - strandat 2580.863 kb on + strand, within SGL_RS13900at 2580.938 kb on + strand, within SGL_RS13900at 2580.938 kb on + strand, within SGL_RS13900at 2580.940 kb on + strand, within SGL_RS13900at 2580.946 kb on - strand, within SGL_RS13900at 2580.947 kb on + strand, within SGL_RS13900at 2580.948 kb on - strand, within SGL_RS13900at 2581.025 kb on + strand, within SGL_RS13900at 2581.191 kb on - strand, within SGL_RS13900at 2581.438 kb on + strand, within SGL_RS13900

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,579,596 + SGL_RS13890 0.35 -1.8
2,579,730 - SGL_RS13890 0.51 -2.1
2,579,934 - SGL_RS13890 0.76 -1.8
2,579,953 + SGL_RS13890 0.78 -2.1
2,580,006 + SGL_RS13890 0.84 -1.6
2,580,043 + SGL_RS13890 0.89 -1.2
2,580,191 - +0.0
2,580,332 - SGL_RS13895 0.15 +2.1
2,580,568 + +0.8
2,580,601 + +1.0
2,580,794 - +0.9
2,580,863 + SGL_RS13900 0.13 -0.1
2,580,938 + SGL_RS13900 0.19 +1.3
2,580,938 + SGL_RS13900 0.19 +0.8
2,580,940 + SGL_RS13900 0.19 +1.4
2,580,946 - SGL_RS13900 0.20 +1.1
2,580,947 + SGL_RS13900 0.20 +1.1
2,580,948 - SGL_RS13900 0.20 +1.1
2,581,025 + SGL_RS13900 0.27 +1.3
2,581,191 - SGL_RS13900 0.40 +0.6
2,581,438 + SGL_RS13900 0.61 +0.8

Or see this region's nucleotide sequence