Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13845 and SGL_RS13850 are separated by 157 nucleotides SGL_RS13850 and SGL_RS13855 are separated by 93 nucleotides SGL_RS13855 and SGL_RS13860 are separated by 99 nucleotides SGL_RS13860 and SGL_RS13865 are separated by 229 nucleotides
SGL_RS13845: SGL_RS13845 - NACHT domain-containing protein, at 2,569,772 to 2,573,491
_RS13845
SGL_RS13850: SGL_RS13850 - glutathione S-transferase family protein, at 2,573,649 to 2,574,203
_RS13850
SGL_RS13855: SGL_RS13855 - hypothetical protein, at 2,574,297 to 2,575,244
_RS13855
SGL_RS13860: SGL_RS13860 - acetolactate synthase small subunit, at 2,575,344 to 2,575,862
_RS13860
SGL_RS13865: SGL_RS13865 - DUF3285 domain-containing protein, at 2,576,092 to 2,576,280
_RS13865
Position (kb)
2574
2575
2576 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2573.495 kb on - strand at 2573.520 kb on - strand at 2573.623 kb on - strand at 2573.640 kb on + strand at 2573.647 kb on + strand at 2573.687 kb on + strand at 2573.694 kb on + strand at 2573.768 kb on - strand, within SGL_RS13850 at 2573.903 kb on - strand, within SGL_RS13850 at 2573.906 kb on + strand, within SGL_RS13850 at 2573.914 kb on - strand, within SGL_RS13850 at 2573.944 kb on + strand, within SGL_RS13850 at 2573.944 kb on + strand, within SGL_RS13850 at 2573.944 kb on + strand, within SGL_RS13850 at 2573.944 kb on + strand, within SGL_RS13850 at 2574.019 kb on + strand, within SGL_RS13850 at 2574.100 kb on + strand, within SGL_RS13850 at 2574.107 kb on + strand, within SGL_RS13850 at 2574.143 kb on - strand, within SGL_RS13850 at 2574.593 kb on - strand, within SGL_RS13855 at 2574.718 kb on + strand, within SGL_RS13855 at 2574.763 kb on - strand, within SGL_RS13855 at 2575.096 kb on + strand, within SGL_RS13855 at 2575.104 kb on - strand, within SGL_RS13855 at 2575.248 kb on - strand at 2575.273 kb on + strand at 2575.283 kb on + strand at 2575.604 kb on + strand, within SGL_RS13860 at 2576.003 kb on - strand at 2576.178 kb on + strand, within SGL_RS13865 at 2576.180 kb on + strand, within SGL_RS13865 at 2576.186 kb on - strand, within SGL_RS13865 at 2576.188 kb on - strand, within SGL_RS13865
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,573,495 - +0.4 2,573,520 - -0.0 2,573,623 - +0.4 2,573,640 + +0.3 2,573,647 + -0.2 2,573,687 + +0.4 2,573,694 + +0.8 2,573,768 - SGL_RS13850 0.21 +0.6 2,573,903 - SGL_RS13850 0.46 +0.2 2,573,906 + SGL_RS13850 0.46 -0.3 2,573,914 - SGL_RS13850 0.48 -0.2 2,573,944 + SGL_RS13850 0.53 -0.4 2,573,944 + SGL_RS13850 0.53 -0.7 2,573,944 + SGL_RS13850 0.53 +0.1 2,573,944 + SGL_RS13850 0.53 -0.4 2,574,019 + SGL_RS13850 0.67 +0.1 2,574,100 + SGL_RS13850 0.81 +0.6 2,574,107 + SGL_RS13850 0.83 -0.0 2,574,143 - SGL_RS13850 0.89 -0.3 2,574,593 - SGL_RS13855 0.31 +2.3 2,574,718 + SGL_RS13855 0.44 +2.5 2,574,763 - SGL_RS13855 0.49 +1.8 2,575,096 + SGL_RS13855 0.84 +2.1 2,575,104 - SGL_RS13855 0.85 +2.2 2,575,248 - +2.4 2,575,273 + +2.0 2,575,283 + +2.8 2,575,604 + SGL_RS13860 0.50 -2.0 2,576,003 - +0.8 2,576,178 + SGL_RS13865 0.46 -0.9 2,576,180 + SGL_RS13865 0.47 -0.2 2,576,186 - SGL_RS13865 0.50 -2.3 2,576,188 - SGL_RS13865 0.51 -0.6
Or see this region's nucleotide sequence