Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13770

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13765 and SGL_RS13770 are separated by 153 nucleotidesSGL_RS13770 and SGL_RS13775 are separated by 164 nucleotidesSGL_RS13775 and SGL_RS13780 are separated by 310 nucleotides SGL_RS13765: SGL_RS13765 - glycolate oxidase subunit GlcD, at 2,553,961 to 2,555,439 _RS13765 SGL_RS13770: SGL_RS13770 - DUF3082 domain-containing protein, at 2,555,593 to 2,555,916 _RS13770 SGL_RS13775: SGL_RS13775 - hypothetical protein, at 2,556,081 to 2,556,503 _RS13775 SGL_RS13780: SGL_RS13780 - WD40 repeat domain-containing protein, at 2,556,814 to 2,558,319 _RS13780 Position (kb) 2555 2556Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2554.934 kb on - strand, within SGL_RS13765at 2555.043 kb on - strand, within SGL_RS13765at 2555.118 kb on - strand, within SGL_RS13765at 2555.181 kb on - strand, within SGL_RS13765at 2555.196 kb on - strand, within SGL_RS13765at 2555.287 kb on + strand, within SGL_RS13765at 2555.820 kb on - strand, within SGL_RS13770at 2556.665 kb on + strandat 2556.683 kb on - strandat 2556.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,554,934 - SGL_RS13765 0.66 +0.3
2,555,043 - SGL_RS13765 0.73 -0.8
2,555,118 - SGL_RS13765 0.78 -0.2
2,555,181 - SGL_RS13765 0.82 +0.0
2,555,196 - SGL_RS13765 0.84 +0.5
2,555,287 + SGL_RS13765 0.90 +0.2
2,555,820 - SGL_RS13770 0.70 +5.1
2,556,665 + -0.6
2,556,683 - +0.3
2,556,870 - -0.0

Or see this region's nucleotide sequence