Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13585

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13580 and SGL_RS13585 are separated by 136 nucleotidesSGL_RS13585 and SGL_RS13590 overlap by 28 nucleotides SGL_RS13580: SGL_RS13580 - FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO, at 2,516,814 to 2,518,184 _RS13580 SGL_RS13585: SGL_RS13585 - PAS domain S-box protein, at 2,518,321 to 2,521,857 _RS13585 SGL_RS13590: SGL_RS13590 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 2,521,830 to 2,523,737 _RS13590 Position (kb) 2518 2519 2520 2521 2522Strain fitness (log2 ratio) -2 -1 0 1 2at 2517.420 kb on + strand, within SGL_RS13580at 2517.433 kb on + strand, within SGL_RS13580at 2517.441 kb on - strand, within SGL_RS13580at 2517.561 kb on - strand, within SGL_RS13580at 2517.691 kb on - strand, within SGL_RS13580at 2517.765 kb on - strand, within SGL_RS13580at 2517.793 kb on - strand, within SGL_RS13580at 2517.847 kb on - strand, within SGL_RS13580at 2517.903 kb on + strand, within SGL_RS13580at 2517.903 kb on + strand, within SGL_RS13580at 2517.909 kb on + strand, within SGL_RS13580at 2518.031 kb on + strand, within SGL_RS13580at 2518.034 kb on - strand, within SGL_RS13580at 2518.055 kb on + strandat 2518.140 kb on + strandat 2518.165 kb on - strandat 2518.169 kb on + strandat 2518.177 kb on - strandat 2518.249 kb on - strandat 2518.268 kb on - strandat 2518.310 kb on + strandat 2518.386 kb on + strandat 2518.436 kb on + strandat 2519.359 kb on - strand, within SGL_RS13585at 2519.409 kb on + strand, within SGL_RS13585at 2519.419 kb on - strand, within SGL_RS13585at 2519.948 kb on + strand, within SGL_RS13585at 2519.948 kb on + strand, within SGL_RS13585at 2519.951 kb on - strand, within SGL_RS13585at 2519.956 kb on - strand, within SGL_RS13585at 2519.956 kb on - strand, within SGL_RS13585at 2520.072 kb on - strand, within SGL_RS13585at 2520.296 kb on - strand, within SGL_RS13585at 2520.531 kb on + strand, within SGL_RS13585at 2520.539 kb on + strand, within SGL_RS13585at 2520.573 kb on - strand, within SGL_RS13585at 2520.943 kb on - strand, within SGL_RS13585at 2521.082 kb on - strand, within SGL_RS13585at 2521.470 kb on + strand, within SGL_RS13585at 2521.553 kb on - strandat 2521.696 kb on + strandat 2521.707 kb on + strandat 2521.791 kb on - strandat 2521.808 kb on - strandat 2522.314 kb on + strand, within SGL_RS13590at 2522.807 kb on + strand, within SGL_RS13590

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,517,420 + SGL_RS13580 0.44 +0.5
2,517,433 + SGL_RS13580 0.45 -0.5
2,517,441 - SGL_RS13580 0.46 -1.2
2,517,561 - SGL_RS13580 0.54 +0.0
2,517,691 - SGL_RS13580 0.64 +0.1
2,517,765 - SGL_RS13580 0.69 -0.5
2,517,793 - SGL_RS13580 0.71 -0.3
2,517,847 - SGL_RS13580 0.75 -2.4
2,517,903 + SGL_RS13580 0.79 -0.3
2,517,903 + SGL_RS13580 0.79 -0.3
2,517,909 + SGL_RS13580 0.80 -0.4
2,518,031 + SGL_RS13580 0.89 +0.1
2,518,034 - SGL_RS13580 0.89 -0.1
2,518,055 + -1.1
2,518,140 + +0.1
2,518,165 - -0.1
2,518,169 + +0.2
2,518,177 - -0.5
2,518,249 - +1.2
2,518,268 - +0.5
2,518,310 + +0.5
2,518,386 + +1.5
2,518,436 + +1.0
2,519,359 - SGL_RS13585 0.29 +1.3
2,519,409 + SGL_RS13585 0.31 +1.2
2,519,419 - SGL_RS13585 0.31 +1.0
2,519,948 + SGL_RS13585 0.46 +1.1
2,519,948 + SGL_RS13585 0.46 +1.4
2,519,951 - SGL_RS13585 0.46 +1.0
2,519,956 - SGL_RS13585 0.46 +1.4
2,519,956 - SGL_RS13585 0.46 +0.8
2,520,072 - SGL_RS13585 0.50 +1.2
2,520,296 - SGL_RS13585 0.56 +0.8
2,520,531 + SGL_RS13585 0.62 +1.3
2,520,539 + SGL_RS13585 0.63 +2.0
2,520,573 - SGL_RS13585 0.64 +0.8
2,520,943 - SGL_RS13585 0.74 +1.3
2,521,082 - SGL_RS13585 0.78 +0.4
2,521,470 + SGL_RS13585 0.89 +1.0
2,521,553 - +1.1
2,521,696 + +1.5
2,521,707 + +1.5
2,521,791 - +1.6
2,521,808 - +0.4
2,522,314 + SGL_RS13590 0.25 -0.2
2,522,807 + SGL_RS13590 0.51 -1.5

Or see this region's nucleotide sequence