Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13550 and SGL_RS13555 are separated by 218 nucleotides SGL_RS13555 and SGL_RS13560 are separated by 257 nucleotides
SGL_RS13550: SGL_RS13550 - long-chain acyl-[acyl-carrier-protein] reductase, at 2,510,273 to 2,511,295
_RS13550
SGL_RS13555: SGL_RS13555 - aldehyde oxygenase (deformylating), at 2,511,514 to 2,512,209
_RS13555
SGL_RS13560: SGL_RS13560 - glucose-1-phosphate thymidylyltransferase, at 2,512,467 to 2,513,564
_RS13560
Position (kb)
2511
2512
2513 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2510.662 kb on - strand, within SGL_RS13550 at 2511.038 kb on + strand, within SGL_RS13550 at 2511.230 kb on + strand at 2511.238 kb on - strand at 2511.358 kb on + strand at 2511.366 kb on - strand at 2511.405 kb on + strand at 2511.429 kb on + strand at 2511.652 kb on + strand, within SGL_RS13555 at 2511.788 kb on + strand, within SGL_RS13555 at 2512.136 kb on - strand, within SGL_RS13555 at 2512.232 kb on - strand at 2512.377 kb on - strand at 2512.396 kb on - strand at 2512.404 kb on + strand at 2512.407 kb on - strand at 2512.457 kb on - strand at 2512.478 kb on - strand at 2512.494 kb on + strand at 2512.673 kb on - strand, within SGL_RS13560 at 2512.687 kb on - strand, within SGL_RS13560 at 2512.752 kb on + strand, within SGL_RS13560 at 2512.761 kb on + strand, within SGL_RS13560 at 2512.817 kb on + strand, within SGL_RS13560 at 2512.950 kb on + strand, within SGL_RS13560 at 2512.951 kb on - strand, within SGL_RS13560 at 2513.008 kb on + strand, within SGL_RS13560 at 2513.025 kb on + strand, within SGL_RS13560 at 2513.108 kb on - strand, within SGL_RS13560 at 2513.108 kb on - strand, within SGL_RS13560
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,510,662 - SGL_RS13550 0.38 -3.3 2,511,038 + SGL_RS13550 0.75 -2.5 2,511,230 + -4.8 2,511,238 - -4.7 2,511,358 + -3.5 2,511,366 - -2.5 2,511,405 + +0.0 2,511,429 + +0.5 2,511,652 + SGL_RS13555 0.20 -5.4 2,511,788 + SGL_RS13555 0.39 -2.9 2,512,136 - SGL_RS13555 0.89 -4.6 2,512,232 - -4.8 2,512,377 - -0.6 2,512,396 - -0.9 2,512,404 + -1.5 2,512,407 - -0.4 2,512,457 - +0.4 2,512,478 - +0.0 2,512,494 + +0.2 2,512,673 - SGL_RS13560 0.19 -0.1 2,512,687 - SGL_RS13560 0.20 -0.5 2,512,752 + SGL_RS13560 0.26 -0.7 2,512,761 + SGL_RS13560 0.27 -0.4 2,512,817 + SGL_RS13560 0.32 -0.5 2,512,950 + SGL_RS13560 0.44 -0.6 2,512,951 - SGL_RS13560 0.44 -3.1 2,513,008 + SGL_RS13560 0.49 -0.2 2,513,025 + SGL_RS13560 0.51 -0.6 2,513,108 - SGL_RS13560 0.58 -2.5 2,513,108 - SGL_RS13560 0.58 -0.3
Or see this region's nucleotide sequence