Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13115

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13110 and SGL_RS13115 are separated by 85 nucleotidesSGL_RS13115 and SGL_RS13120 are separated by 27 nucleotides SGL_RS13110: SGL_RS13110 - ABC transporter ATP-binding protein, at 2,411,067 to 2,412,092 _RS13110 SGL_RS13115: SGL_RS13115 - DUF4126 domain-containing protein, at 2,412,178 to 2,412,798 _RS13115 SGL_RS13120: SGL_RS13120 - amidophosphoribosyltransferase, at 2,412,826 to 2,414,313 _RS13120 Position (kb) 2412 2413Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2412.102 kb on - strandat 2412.179 kb on + strandat 2412.241 kb on + strand, within SGL_RS13115at 2412.241 kb on + strand, within SGL_RS13115at 2412.252 kb on + strand, within SGL_RS13115at 2412.308 kb on - strand, within SGL_RS13115at 2412.516 kb on + strand, within SGL_RS13115at 2412.722 kb on + strand, within SGL_RS13115at 2412.896 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
2,412,102 - -1.6
2,412,179 + -1.8
2,412,241 + SGL_RS13115 0.10 -2.3
2,412,241 + SGL_RS13115 0.10 -4.4
2,412,252 + SGL_RS13115 0.12 -2.9
2,412,308 - SGL_RS13115 0.21 -2.3
2,412,516 + SGL_RS13115 0.54 -1.7
2,412,722 + SGL_RS13115 0.88 -1.2
2,412,896 - -0.2

Or see this region's nucleotide sequence