Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12555

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12550 and SGL_RS12555 overlap by 1 nucleotidesSGL_RS12555 and SGL_RS12560 overlap by 8 nucleotidesSGL_RS12560 and SGL_RS12565 are separated by 47 nucleotides SGL_RS12550: SGL_RS12550 - hybrid sensor histidine kinase/response regulator, at 2,271,581 to 2,274,868 _RS12550 SGL_RS12555: SGL_RS12555 - alpha-mannosidase, at 2,274,868 to 2,277,996 _RS12555 SGL_RS12560: SGL_RS12560 - ABC transporter permease, at 2,277,989 to 2,278,873 _RS12560 SGL_RS12565: SGL_RS12565 - MEKHLA domain-containing protein, at 2,278,921 to 2,279,406 _RS12565 Position (kb) 2274 2275 2276 2277 2278Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2273.942 kb on + strand, within SGL_RS12550at 2273.942 kb on + strand, within SGL_RS12550at 2273.943 kb on - strand, within SGL_RS12550at 2274.062 kb on - strand, within SGL_RS12550at 2274.064 kb on + strand, within SGL_RS12550at 2274.072 kb on - strand, within SGL_RS12550at 2274.220 kb on - strand, within SGL_RS12550at 2274.270 kb on - strand, within SGL_RS12550at 2274.344 kb on + strand, within SGL_RS12550at 2274.352 kb on - strand, within SGL_RS12550at 2274.478 kb on - strand, within SGL_RS12550at 2274.598 kb on - strandat 2274.598 kb on - strandat 2275.895 kb on - strand, within SGL_RS12555at 2277.200 kb on + strand, within SGL_RS12555at 2277.208 kb on - strand, within SGL_RS12555at 2278.254 kb on + strand, within SGL_RS12560at 2278.267 kb on + strand, within SGL_RS12560at 2278.310 kb on - strand, within SGL_RS12560at 2278.372 kb on + strand, within SGL_RS12560at 2278.382 kb on - strand, within SGL_RS12560at 2278.734 kb on + strand, within SGL_RS12560at 2278.996 kb on - strand, within SGL_RS12565

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,273,942 + SGL_RS12550 0.72 +1.2
2,273,942 + SGL_RS12550 0.72 -0.1
2,273,943 - SGL_RS12550 0.72 +2.9
2,274,062 - SGL_RS12550 0.75 +1.0
2,274,064 + SGL_RS12550 0.76 +0.8
2,274,072 - SGL_RS12550 0.76 -1.3
2,274,220 - SGL_RS12550 0.80 -0.1
2,274,270 - SGL_RS12550 0.82 +0.4
2,274,344 + SGL_RS12550 0.84 +0.7
2,274,352 - SGL_RS12550 0.84 +1.4
2,274,478 - SGL_RS12550 0.88 +0.1
2,274,598 - +2.5
2,274,598 - +1.4
2,275,895 - SGL_RS12555 0.33 +3.2
2,277,200 + SGL_RS12555 0.75 +3.5
2,277,208 - SGL_RS12555 0.75 +2.4
2,278,254 + SGL_RS12560 0.30 -4.6
2,278,267 + SGL_RS12560 0.31 -6.2
2,278,310 - SGL_RS12560 0.36 -3.4
2,278,372 + SGL_RS12560 0.43 -4.0
2,278,382 - SGL_RS12560 0.44 -3.7
2,278,734 + SGL_RS12560 0.84 -4.5
2,278,996 - SGL_RS12565 0.15 -0.1

Or see this region's nucleotide sequence