Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12205 and SGL_RS12210 are separated by 393 nucleotides SGL_RS12210 and SGL_RS20075 are separated by 103 nucleotides
SGL_RS12205: SGL_RS12205 - efflux RND transporter periplasmic adaptor subunit, at 2,201,147 to 2,202,550
_RS12205
SGL_RS12210: SGL_RS12210 - type IV pilus twitching motility protein PilT, at 2,202,944 to 2,204,053
_RS12210
SGL_RS20075: SGL_RS20075 - type II secretion system F family protein, at 2,204,157 to 2,205,372
_RS20075
Position (kb)
2202
2203
2204
2205 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8 at 2202.004 kb on - strand, within SGL_RS12205 at 2202.085 kb on - strand, within SGL_RS12205 at 2202.087 kb on + strand, within SGL_RS12205 at 2202.113 kb on + strand, within SGL_RS12205 at 2202.121 kb on - strand, within SGL_RS12205 at 2202.157 kb on - strand, within SGL_RS12205 at 2202.182 kb on + strand, within SGL_RS12205 at 2202.192 kb on + strand, within SGL_RS12205 at 2202.192 kb on + strand, within SGL_RS12205 at 2202.386 kb on + strand, within SGL_RS12205 at 2202.397 kb on + strand, within SGL_RS12205 at 2202.399 kb on - strand, within SGL_RS12205 at 2202.413 kb on - strand at 2202.615 kb on - strand at 2202.931 kb on - strand at 2202.948 kb on - strand at 2202.971 kb on - strand at 2203.061 kb on - strand, within SGL_RS12210 at 2203.200 kb on + strand, within SGL_RS12210 at 2203.296 kb on - strand, within SGL_RS12210 at 2203.410 kb on - strand, within SGL_RS12210 at 2203.602 kb on - strand, within SGL_RS12210 at 2203.637 kb on + strand, within SGL_RS12210 at 2203.708 kb on + strand, within SGL_RS12210 at 2203.711 kb on - strand, within SGL_RS12210 at 2203.716 kb on - strand, within SGL_RS12210 at 2203.731 kb on + strand, within SGL_RS12210 at 2203.914 kb on + strand, within SGL_RS12210 at 2203.919 kb on + strand, within SGL_RS12210 at 2204.158 kb on + strand at 2204.235 kb on - strand at 2204.250 kb on - strand at 2204.484 kb on + strand, within SGL_RS20075 at 2204.492 kb on - strand, within SGL_RS20075 at 2204.494 kb on + strand, within SGL_RS20075 at 2204.672 kb on - strand, within SGL_RS20075
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,202,004 - SGL_RS12205 0.61 -0.8 2,202,085 - SGL_RS12205 0.67 -0.2 2,202,087 + SGL_RS12205 0.67 -0.2 2,202,113 + SGL_RS12205 0.69 -0.7 2,202,121 - SGL_RS12205 0.69 -1.5 2,202,157 - SGL_RS12205 0.72 -0.3 2,202,182 + SGL_RS12205 0.74 -0.2 2,202,192 + SGL_RS12205 0.74 -0.3 2,202,192 + SGL_RS12205 0.74 -0.2 2,202,386 + SGL_RS12205 0.88 +0.1 2,202,397 + SGL_RS12205 0.89 -0.6 2,202,399 - SGL_RS12205 0.89 -0.6 2,202,413 - +0.2 2,202,615 - -0.7 2,202,931 - +3.3 2,202,948 - +6.9 2,202,971 - +6.4 2,203,061 - SGL_RS12210 0.11 +6.1 2,203,200 + SGL_RS12210 0.23 +6.7 2,203,296 - SGL_RS12210 0.32 +6.3 2,203,410 - SGL_RS12210 0.42 +6.6 2,203,602 - SGL_RS12210 0.59 +5.9 2,203,637 + SGL_RS12210 0.62 +7.4 2,203,708 + SGL_RS12210 0.69 +8.5 2,203,711 - SGL_RS12210 0.69 +6.8 2,203,716 - SGL_RS12210 0.70 +7.9 2,203,731 + SGL_RS12210 0.71 +7.0 2,203,914 + SGL_RS12210 0.87 +7.6 2,203,919 + SGL_RS12210 0.88 +7.4 2,204,158 + +1.0 2,204,235 - +0.9 2,204,250 - +0.9 2,204,484 + SGL_RS20075 0.27 +1.2 2,204,492 - SGL_RS20075 0.28 +1.0 2,204,494 + SGL_RS20075 0.28 +0.9 2,204,672 - SGL_RS20075 0.42 +0.6
Or see this region's nucleotide sequence