Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11920

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11910 and SGL_RS11915 are separated by 289 nucleotidesSGL_RS11915 and SGL_RS11920 are separated by 40 nucleotidesSGL_RS11920 and SGL_RS11925 are separated by 242 nucleotides SGL_RS11910: SGL_RS11910 - hemolysin family protein, at 2,126,243 to 2,127,589 _RS11910 SGL_RS11915: SGL_RS11915 - 30S ribosomal protein S16, at 2,127,879 to 2,128,127 _RS11915 SGL_RS11920: SGL_RS11920 - KH domain-containing protein, at 2,128,168 to 2,128,524 _RS11920 SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941 _RS11925 Position (kb) 2128 2129Strain fitness (log2 ratio) -1 0 1at 2127.199 kb on - strand, within SGL_RS11910at 2127.384 kb on - strand, within SGL_RS11910at 2127.482 kb on + strandat 2127.644 kb on + strandat 2127.739 kb on + strandat 2128.156 kb on + strandat 2128.182 kb on - strandat 2128.441 kb on + strand, within SGL_RS11920at 2128.449 kb on - strand, within SGL_RS11920at 2128.496 kb on + strandat 2128.496 kb on + strandat 2128.533 kb on - strandat 2128.677 kb on - strandat 2128.990 kb on - strand, within SGL_RS11925at 2128.997 kb on + strand, within SGL_RS11925at 2129.002 kb on + strand, within SGL_RS11925at 2129.005 kb on - strand, within SGL_RS11925at 2129.005 kb on - strand, within SGL_RS11925at 2129.099 kb on - strand, within SGL_RS11925at 2129.199 kb on - strand, within SGL_RS11925at 2129.354 kb on - strand, within SGL_RS11925at 2129.478 kb on - strand, within SGL_RS11925

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,127,199 - SGL_RS11910 0.71 +1.3
2,127,384 - SGL_RS11910 0.85 +1.5
2,127,482 + +1.0
2,127,644 + -0.0
2,127,739 + +0.8
2,128,156 + +1.0
2,128,182 - +1.7
2,128,441 + SGL_RS11920 0.76 +1.5
2,128,449 - SGL_RS11920 0.79 +1.5
2,128,496 + +0.9
2,128,496 + +0.2
2,128,533 - +0.2
2,128,677 - -0.3
2,128,990 - SGL_RS11925 0.10 -0.4
2,128,997 + SGL_RS11925 0.11 +0.4
2,129,002 + SGL_RS11925 0.11 +0.2
2,129,005 - SGL_RS11925 0.11 +0.1
2,129,005 - SGL_RS11925 0.11 -0.1
2,129,099 - SGL_RS11925 0.15 -0.7
2,129,199 - SGL_RS11925 0.20 -1.0
2,129,354 - SGL_RS11925 0.27 +0.5
2,129,478 - SGL_RS11925 0.33 +0.3

Or see this region's nucleotide sequence