Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11825 and SGL_RS11830 are separated by 47 nucleotides SGL_RS11830 and SGL_RS11835 are separated by 30 nucleotides SGL_RS11835 and SGL_RS11840 are separated by 228 nucleotides
SGL_RS11825: SGL_RS11825 - sodium:proton antiporter, at 2,102,769 to 2,104,391
_RS11825
SGL_RS11830: SGL_RS11830 - DUF2996 domain-containing protein, at 2,104,439 to 2,104,912
_RS11830
SGL_RS11835: SGL_RS11835 - transcription antitermination factor NusB, at 2,104,943 to 2,105,608
_RS11835
SGL_RS11840: SGL_RS11840 - phosphodiester glycosidase family protein, at 2,105,837 to 2,107,645
_RS11840
Position (kb)
2104
2105
2106 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2103.952 kb on - strand, within SGL_RS11825 at 2103.956 kb on + strand, within SGL_RS11825 at 2104.056 kb on - strand, within SGL_RS11825 at 2104.213 kb on - strand, within SGL_RS11825 at 2104.259 kb on - strand at 2104.396 kb on - strand at 2104.401 kb on - strand at 2104.403 kb on - strand at 2104.460 kb on - strand at 2104.490 kb on - strand, within SGL_RS11830 at 2104.540 kb on - strand, within SGL_RS11830 at 2105.030 kb on + strand, within SGL_RS11835 at 2105.171 kb on + strand, within SGL_RS11835 at 2105.334 kb on + strand, within SGL_RS11835 at 2105.340 kb on - strand, within SGL_RS11835 at 2105.342 kb on - strand, within SGL_RS11835 at 2105.364 kb on - strand, within SGL_RS11835 at 2105.364 kb on - strand, within SGL_RS11835 at 2105.691 kb on - strand at 2105.745 kb on + strand at 2105.745 kb on + strand at 2105.745 kb on + strand at 2105.928 kb on + strand at 2105.995 kb on + strand at 2106.003 kb on - strand at 2106.076 kb on - strand, within SGL_RS11840 at 2106.250 kb on + strand, within SGL_RS11840 at 2106.436 kb on - strand, within SGL_RS11840 at 2106.559 kb on + strand, within SGL_RS11840
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 2,103,952 - SGL_RS11825 0.73 +0.0 2,103,956 + SGL_RS11825 0.73 +0.1 2,104,056 - SGL_RS11825 0.79 -0.5 2,104,213 - SGL_RS11825 0.89 +0.0 2,104,259 - -0.1 2,104,396 - +0.0 2,104,401 - -0.3 2,104,403 - -0.3 2,104,460 - -2.5 2,104,490 - SGL_RS11830 0.11 -0.2 2,104,540 - SGL_RS11830 0.21 -0.1 2,105,030 + SGL_RS11835 0.13 +1.1 2,105,171 + SGL_RS11835 0.34 +1.5 2,105,334 + SGL_RS11835 0.59 +1.2 2,105,340 - SGL_RS11835 0.60 +3.5 2,105,342 - SGL_RS11835 0.60 +1.4 2,105,364 - SGL_RS11835 0.63 +1.7 2,105,364 - SGL_RS11835 0.63 +1.5 2,105,691 - +0.1 2,105,745 + -0.4 2,105,745 + +0.1 2,105,745 + -0.2 2,105,928 + -1.8 2,105,995 + -2.3 2,106,003 - -2.1 2,106,076 - SGL_RS11840 0.13 -2.4 2,106,250 + SGL_RS11840 0.23 -0.3 2,106,436 - SGL_RS11840 0.33 -0.3 2,106,559 + SGL_RS11840 0.40 -2.6
Or see this region's nucleotide sequence