Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11810

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11805 and SGL_RS11810 are separated by 318 nucleotidesSGL_RS11810 and SGL_RS11815 are separated by 201 nucleotides SGL_RS11805: SGL_RS11805 - DNA polymerase III subunit delta', at 2,097,643 to 2,098,602 _RS11805 SGL_RS11810: SGL_RS11810 - urea ABC transporter substrate-binding protein, at 2,098,921 to 2,100,261 _RS11810 SGL_RS11815: SGL_RS11815 - DNA repair protein RadA, at 2,100,463 to 2,101,980 _RS11815 Position (kb) 2098 2099 2100 2101Strain fitness (log2 ratio) -1 0 1 2 3at 2098.659 kb on + strandat 2098.699 kb on - strandat 2098.805 kb on - strandat 2098.925 kb on - strandat 2098.989 kb on + strandat 2099.010 kb on + strandat 2099.049 kb on + strandat 2099.202 kb on - strand, within SGL_RS11810at 2099.284 kb on + strand, within SGL_RS11810at 2099.368 kb on - strand, within SGL_RS11810at 2099.383 kb on - strand, within SGL_RS11810at 2099.400 kb on - strand, within SGL_RS11810at 2099.468 kb on - strand, within SGL_RS11810at 2099.528 kb on + strand, within SGL_RS11810at 2099.537 kb on - strand, within SGL_RS11810at 2099.604 kb on - strand, within SGL_RS11810at 2099.612 kb on + strand, within SGL_RS11810at 2099.649 kb on + strand, within SGL_RS11810at 2099.652 kb on - strand, within SGL_RS11810at 2099.690 kb on + strand, within SGL_RS11810at 2099.850 kb on - strand, within SGL_RS11810at 2099.850 kb on - strand, within SGL_RS11810at 2100.254 kb on - strandat 2100.383 kb on - strandat 2100.435 kb on + strandat 2100.450 kb on - strandat 2100.467 kb on - strandat 2100.530 kb on - strandat 2100.608 kb on + strandat 2100.616 kb on - strand, within SGL_RS11815at 2100.662 kb on - strand, within SGL_RS11815at 2100.754 kb on - strand, within SGL_RS11815at 2100.908 kb on + strand, within SGL_RS11815at 2100.908 kb on + strand, within SGL_RS11815at 2100.960 kb on - strand, within SGL_RS11815

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,098,659 + +0.3
2,098,699 - -0.0
2,098,805 - +1.2
2,098,925 - +1.4
2,098,989 + +1.4
2,099,010 + +1.1
2,099,049 + +1.3
2,099,202 - SGL_RS11810 0.21 +1.3
2,099,284 + SGL_RS11810 0.27 +1.5
2,099,368 - SGL_RS11810 0.33 +2.0
2,099,383 - SGL_RS11810 0.34 +1.7
2,099,400 - SGL_RS11810 0.36 +1.6
2,099,468 - SGL_RS11810 0.41 +1.3
2,099,528 + SGL_RS11810 0.45 +1.4
2,099,537 - SGL_RS11810 0.46 +1.5
2,099,604 - SGL_RS11810 0.51 +1.6
2,099,612 + SGL_RS11810 0.52 +1.6
2,099,649 + SGL_RS11810 0.54 +1.5
2,099,652 - SGL_RS11810 0.55 +1.2
2,099,690 + SGL_RS11810 0.57 +1.0
2,099,850 - SGL_RS11810 0.69 +1.5
2,099,850 - SGL_RS11810 0.69 +3.0
2,100,254 - +1.2
2,100,383 - +0.4
2,100,435 + +0.3
2,100,450 - +0.5
2,100,467 - -1.6
2,100,530 - +0.2
2,100,608 + +0.1
2,100,616 - SGL_RS11815 0.10 +0.0
2,100,662 - SGL_RS11815 0.13 -0.6
2,100,754 - SGL_RS11815 0.19 -0.1
2,100,908 + SGL_RS11815 0.29 +0.4
2,100,908 + SGL_RS11815 0.29 -0.4
2,100,960 - SGL_RS11815 0.33 +0.3

Or see this region's nucleotide sequence