Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11685

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11675 and SGL_RS11680 overlap by 4 nucleotidesSGL_RS11680 and SGL_RS11685 are separated by 39 nucleotidesSGL_RS11685 and SGL_RS11690 are separated by 25 nucleotides SGL_RS11675: SGL_RS11675 - chromophore lyase CpcT/CpeT, at 2,075,381 to 2,075,971 _RS11675 SGL_RS11680: SGL_RS11680 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,075,968 to 2,076,507 _RS11680 SGL_RS11685: SGL_RS11685 - diflavin flavoprotein, at 2,076,547 to 2,078,340 _RS11685 SGL_RS11690: SGL_RS11690 - DNA repair protein RecN, at 2,078,366 to 2,080,120 _RS11690 Position (kb) 2076 2077 2078 2079Strain fitness (log2 ratio) -1 0 1 2 3at 2075.585 kb on - strand, within SGL_RS11675at 2075.592 kb on + strand, within SGL_RS11675at 2075.791 kb on - strand, within SGL_RS11675at 2075.832 kb on + strand, within SGL_RS11675at 2076.057 kb on - strand, within SGL_RS11680at 2076.632 kb on + strandat 2076.883 kb on + strand, within SGL_RS11685at 2076.940 kb on + strand, within SGL_RS11685at 2076.973 kb on + strand, within SGL_RS11685at 2077.276 kb on + strand, within SGL_RS11685at 2077.284 kb on - strand, within SGL_RS11685at 2077.284 kb on - strand, within SGL_RS11685at 2077.297 kb on + strand, within SGL_RS11685at 2077.325 kb on - strand, within SGL_RS11685at 2077.404 kb on - strand, within SGL_RS11685at 2077.452 kb on + strand, within SGL_RS11685at 2077.502 kb on + strand, within SGL_RS11685at 2077.602 kb on - strand, within SGL_RS11685at 2077.639 kb on - strand, within SGL_RS11685at 2077.662 kb on - strand, within SGL_RS11685at 2077.727 kb on + strand, within SGL_RS11685at 2077.747 kb on + strand, within SGL_RS11685at 2077.779 kb on + strand, within SGL_RS11685at 2077.787 kb on + strand, within SGL_RS11685at 2077.794 kb on - strand, within SGL_RS11685at 2077.820 kb on - strand, within SGL_RS11685at 2077.839 kb on - strand, within SGL_RS11685at 2077.949 kb on - strand, within SGL_RS11685at 2078.009 kb on + strand, within SGL_RS11685at 2078.044 kb on + strand, within SGL_RS11685at 2078.044 kb on + strand, within SGL_RS11685at 2078.124 kb on + strand, within SGL_RS11685at 2078.224 kb on + strandat 2078.245 kb on + strandat 2078.363 kb on + strandat 2078.494 kb on + strandat 2078.508 kb on - strandat 2078.517 kb on - strandat 2078.549 kb on - strand, within SGL_RS11690at 2078.598 kb on + strand, within SGL_RS11690at 2078.604 kb on + strand, within SGL_RS11690at 2078.647 kb on - strand, within SGL_RS11690at 2078.777 kb on + strand, within SGL_RS11690at 2078.844 kb on + strand, within SGL_RS11690at 2079.047 kb on - strand, within SGL_RS11690at 2079.064 kb on - strand, within SGL_RS11690at 2079.239 kb on + strand, within SGL_RS11690at 2079.303 kb on + strand, within SGL_RS11690

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,075,585 - SGL_RS11675 0.35 +3.6
2,075,592 + SGL_RS11675 0.36 +2.3
2,075,791 - SGL_RS11675 0.69 +3.3
2,075,832 + SGL_RS11675 0.76 +3.1
2,076,057 - SGL_RS11680 0.16 +0.2
2,076,632 + +1.5
2,076,883 + SGL_RS11685 0.19 +1.9
2,076,940 + SGL_RS11685 0.22 +1.3
2,076,973 + SGL_RS11685 0.24 +2.2
2,077,276 + SGL_RS11685 0.41 +1.8
2,077,284 - SGL_RS11685 0.41 +0.1
2,077,284 - SGL_RS11685 0.41 -0.1
2,077,297 + SGL_RS11685 0.42 +1.0
2,077,325 - SGL_RS11685 0.43 +0.9
2,077,404 - SGL_RS11685 0.48 +0.1
2,077,452 + SGL_RS11685 0.50 +2.9
2,077,502 + SGL_RS11685 0.53 +1.9
2,077,602 - SGL_RS11685 0.59 +1.9
2,077,639 - SGL_RS11685 0.61 +0.5
2,077,662 - SGL_RS11685 0.62 +1.0
2,077,727 + SGL_RS11685 0.66 +0.9
2,077,747 + SGL_RS11685 0.67 +0.0
2,077,779 + SGL_RS11685 0.69 +2.7
2,077,787 + SGL_RS11685 0.69 +2.1
2,077,794 - SGL_RS11685 0.70 +2.2
2,077,820 - SGL_RS11685 0.71 +2.4
2,077,839 - SGL_RS11685 0.72 -0.6
2,077,949 - SGL_RS11685 0.78 +1.8
2,078,009 + SGL_RS11685 0.81 +2.3
2,078,044 + SGL_RS11685 0.83 +2.9
2,078,044 + SGL_RS11685 0.83 +2.5
2,078,124 + SGL_RS11685 0.88 +2.2
2,078,224 + +1.8
2,078,245 + +2.6
2,078,363 + -1.0
2,078,494 + +0.9
2,078,508 - -0.1
2,078,517 - -0.6
2,078,549 - SGL_RS11690 0.10 -1.0
2,078,598 + SGL_RS11690 0.13 -0.2
2,078,604 + SGL_RS11690 0.14 +0.0
2,078,647 - SGL_RS11690 0.16 -0.2
2,078,777 + SGL_RS11690 0.23 +0.0
2,078,844 + SGL_RS11690 0.27 +0.3
2,079,047 - SGL_RS11690 0.39 +0.4
2,079,064 - SGL_RS11690 0.40 +0.2
2,079,239 + SGL_RS11690 0.50 +0.3
2,079,303 + SGL_RS11690 0.53 +0.2

Or see this region's nucleotide sequence