Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11460

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11450 and SGL_RS11455 are separated by 30 nucleotidesSGL_RS11455 and SGL_RS11460 are separated by 153 nucleotidesSGL_RS11460 and SGL_RS11465 are separated by 112 nucleotidesSGL_RS11465 and SGL_RS11470 are separated by 26 nucleotides SGL_RS11450: SGL_RS11450 - cysteine--tRNA ligase, at 2,026,675 to 2,028,126 _RS11450 SGL_RS11455: SGL_RS11455 - Maf family nucleotide pyrophosphatase, at 2,028,157 to 2,028,744 _RS11455 SGL_RS11460: SGL_RS11460 - type II CAAX endopeptidase family protein, at 2,028,898 to 2,030,421 _RS11460 SGL_RS11465: SGL_RS11465 - hypothetical protein, at 2,030,534 to 2,030,974 _RS11465 SGL_RS11470: SGL_RS11470 - carotenoid oxygenase family protein, at 2,031,001 to 2,032,473 _RS11470 Position (kb) 2028 2029 2030 2031Strain fitness (log2 ratio) -1 0 1 2at 2028.301 kb on + strand, within SGL_RS11455at 2028.302 kb on + strand, within SGL_RS11455at 2028.302 kb on + strand, within SGL_RS11455at 2028.328 kb on - strand, within SGL_RS11455at 2028.339 kb on - strand, within SGL_RS11455at 2028.407 kb on - strand, within SGL_RS11455at 2028.501 kb on - strand, within SGL_RS11455at 2028.503 kb on + strand, within SGL_RS11455at 2028.503 kb on + strand, within SGL_RS11455at 2028.511 kb on - strand, within SGL_RS11455at 2028.511 kb on - strand, within SGL_RS11455at 2028.592 kb on - strand, within SGL_RS11455at 2028.609 kb on - strand, within SGL_RS11455at 2028.625 kb on - strand, within SGL_RS11455at 2028.714 kb on - strandat 2028.868 kb on + strandat 2028.968 kb on + strandat 2028.968 kb on + strandat 2028.976 kb on - strandat 2029.126 kb on - strand, within SGL_RS11460at 2029.168 kb on - strand, within SGL_RS11460at 2029.199 kb on - strand, within SGL_RS11460at 2029.287 kb on + strand, within SGL_RS11460at 2029.352 kb on - strand, within SGL_RS11460at 2029.410 kb on - strand, within SGL_RS11460at 2029.548 kb on + strand, within SGL_RS11460at 2029.819 kb on + strand, within SGL_RS11460at 2029.819 kb on + strand, within SGL_RS11460at 2029.863 kb on - strand, within SGL_RS11460at 2029.952 kb on + strand, within SGL_RS11460at 2030.000 kb on - strand, within SGL_RS11460at 2030.026 kb on + strand, within SGL_RS11460at 2030.198 kb on - strand, within SGL_RS11460at 2030.208 kb on - strand, within SGL_RS11460at 2030.243 kb on + strand, within SGL_RS11460at 2030.254 kb on - strand, within SGL_RS11460at 2030.500 kb on - strandat 2030.505 kb on - strandat 2030.599 kb on + strand, within SGL_RS11465at 2031.022 kb on + strandat 2031.085 kb on - strandat 2031.297 kb on + strand, within SGL_RS11470at 2031.300 kb on - strand, within SGL_RS11470

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,028,301 + SGL_RS11455 0.24 -0.4
2,028,302 + SGL_RS11455 0.25 -1.7
2,028,302 + SGL_RS11455 0.25 +0.2
2,028,328 - SGL_RS11455 0.29 +0.3
2,028,339 - SGL_RS11455 0.31 +0.2
2,028,407 - SGL_RS11455 0.43 -0.4
2,028,501 - SGL_RS11455 0.59 -0.6
2,028,503 + SGL_RS11455 0.59 +0.7
2,028,503 + SGL_RS11455 0.59 -0.3
2,028,511 - SGL_RS11455 0.60 -1.0
2,028,511 - SGL_RS11455 0.60 -0.7
2,028,592 - SGL_RS11455 0.74 -0.1
2,028,609 - SGL_RS11455 0.77 -0.1
2,028,625 - SGL_RS11455 0.80 +0.0
2,028,714 - -0.2
2,028,868 + -0.3
2,028,968 + +1.1
2,028,968 + +1.0
2,028,976 - +0.8
2,029,126 - SGL_RS11460 0.15 +0.9
2,029,168 - SGL_RS11460 0.18 +0.8
2,029,199 - SGL_RS11460 0.20 +0.6
2,029,287 + SGL_RS11460 0.26 +1.1
2,029,352 - SGL_RS11460 0.30 +0.4
2,029,410 - SGL_RS11460 0.34 +0.9
2,029,548 + SGL_RS11460 0.43 +0.6
2,029,819 + SGL_RS11460 0.60 +1.2
2,029,819 + SGL_RS11460 0.60 +1.3
2,029,863 - SGL_RS11460 0.63 +1.6
2,029,952 + SGL_RS11460 0.69 +0.5
2,030,000 - SGL_RS11460 0.72 +1.5
2,030,026 + SGL_RS11460 0.74 +0.5
2,030,198 - SGL_RS11460 0.85 +1.0
2,030,208 - SGL_RS11460 0.86 +1.6
2,030,243 + SGL_RS11460 0.88 +0.9
2,030,254 - SGL_RS11460 0.89 +0.9
2,030,500 - +0.2
2,030,505 - +2.0
2,030,599 + SGL_RS11465 0.15 +0.4
2,031,022 + +0.4
2,031,085 - +0.1
2,031,297 + SGL_RS11470 0.20 +0.4
2,031,300 - SGL_RS11470 0.20 -0.6

Or see this region's nucleotide sequence