Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11435

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11425 and SGL_RS11430 are separated by 113 nucleotidesSGL_RS11430 and SGL_RS11435 are separated by 72 nucleotidesSGL_RS11435 and SGL_RS11440 are separated by 12 nucleotides SGL_RS11425: SGL_RS11425 - sucrose-phosphate phosphatase, at 2,023,278 to 2,024,012 _RS11425 SGL_RS11430: SGL_RS11430 - STAS domain-containing protein, at 2,024,126 to 2,024,476 _RS11430 SGL_RS11435: SGL_RS11435 - Mini-ribonuclease 3, at 2,024,549 to 2,024,980 _RS11435 SGL_RS11440: SGL_RS11440 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 2,024,993 to 2,026,147 _RS11440 Position (kb) 2024 2025Strain fitness (log2 ratio) -1 0 1 2 3at 2023.874 kb on + strand, within SGL_RS11425at 2023.915 kb on + strand, within SGL_RS11425at 2024.555 kb on - strandat 2024.617 kb on + strand, within SGL_RS11435at 2024.620 kb on - strand, within SGL_RS11435at 2024.643 kb on + strand, within SGL_RS11435at 2024.866 kb on - strand, within SGL_RS11435at 2024.874 kb on - strand, within SGL_RS11435at 2024.939 kb on + strandat 2025.040 kb on + strandat 2025.057 kb on - strandat 2025.165 kb on - strand, within SGL_RS11440at 2025.206 kb on - strand, within SGL_RS11440at 2025.253 kb on - strand, within SGL_RS11440at 2025.395 kb on + strand, within SGL_RS11440at 2025.432 kb on + strand, within SGL_RS11440at 2025.493 kb on + strand, within SGL_RS11440at 2025.567 kb on - strand, within SGL_RS11440at 2025.578 kb on + strand, within SGL_RS11440at 2025.724 kb on + strand, within SGL_RS11440at 2025.739 kb on - strand, within SGL_RS11440at 2025.770 kb on - strand, within SGL_RS11440at 2025.884 kb on + strand, within SGL_RS11440at 2025.904 kb on + strand, within SGL_RS11440at 2025.926 kb on + strand, within SGL_RS11440at 2025.934 kb on - strand, within SGL_RS11440

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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2,023,874 + SGL_RS11425 0.81 +0.3
2,023,915 + SGL_RS11425 0.87 +0.8
2,024,555 - +1.6
2,024,617 + SGL_RS11435 0.16 +1.1
2,024,620 - SGL_RS11435 0.16 +1.4
2,024,643 + SGL_RS11435 0.22 +0.2
2,024,866 - SGL_RS11435 0.73 +1.3
2,024,874 - SGL_RS11435 0.75 +1.2
2,024,939 + -0.3
2,025,040 + +2.4
2,025,057 - +2.0
2,025,165 - SGL_RS11440 0.15 +2.3
2,025,206 - SGL_RS11440 0.18 +2.9
2,025,253 - SGL_RS11440 0.23 +2.3
2,025,395 + SGL_RS11440 0.35 +2.4
2,025,432 + SGL_RS11440 0.38 +2.6
2,025,493 + SGL_RS11440 0.43 +2.4
2,025,567 - SGL_RS11440 0.50 +2.2
2,025,578 + SGL_RS11440 0.51 +2.3
2,025,724 + SGL_RS11440 0.63 +2.5
2,025,739 - SGL_RS11440 0.65 +2.7
2,025,770 - SGL_RS11440 0.67 +2.3
2,025,884 + SGL_RS11440 0.77 +2.3
2,025,904 + SGL_RS11440 0.79 +2.8
2,025,926 + SGL_RS11440 0.81 +2.8
2,025,934 - SGL_RS11440 0.81 +2.7

Or see this region's nucleotide sequence