Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10790

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10785 and SGL_RS10790 are separated by 135 nucleotidesSGL_RS10790 and SGL_RS10795 overlap by 1 nucleotides SGL_RS10785: SGL_RS10785 - AI-2E family transporter, at 1,887,159 to 1,888,262 _RS10785 SGL_RS10790: SGL_RS10790 - DUF4359 domain-containing protein, at 1,888,398 to 1,888,778 _RS10790 SGL_RS10795: SGL_RS10795 - pentapeptide repeat-containing protein, at 1,888,778 to 1,889,740 _RS10795 Position (kb) 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1at 1887.487 kb on - strand, within SGL_RS10785at 1887.577 kb on + strand, within SGL_RS10785at 1887.653 kb on - strand, within SGL_RS10785at 1887.816 kb on + strand, within SGL_RS10785at 1887.816 kb on + strand, within SGL_RS10785at 1887.824 kb on - strand, within SGL_RS10785at 1887.873 kb on - strand, within SGL_RS10785at 1887.922 kb on - strand, within SGL_RS10785at 1887.934 kb on - strand, within SGL_RS10785at 1888.081 kb on - strand, within SGL_RS10785at 1888.654 kb on + strand, within SGL_RS10790at 1888.693 kb on - strand, within SGL_RS10790at 1888.728 kb on + strand, within SGL_RS10790at 1888.781 kb on + strandat 1888.791 kb on - strandat 1888.859 kb on + strandat 1889.432 kb on + strand, within SGL_RS10795at 1889.432 kb on + strand, within SGL_RS10795at 1889.440 kb on - strand, within SGL_RS10795

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,887,487 - SGL_RS10785 0.30 +0.2
1,887,577 + SGL_RS10785 0.38 -0.2
1,887,653 - SGL_RS10785 0.45 +0.4
1,887,816 + SGL_RS10785 0.60 -0.4
1,887,816 + SGL_RS10785 0.60 -0.6
1,887,824 - SGL_RS10785 0.60 +0.4
1,887,873 - SGL_RS10785 0.65 -0.1
1,887,922 - SGL_RS10785 0.69 +0.2
1,887,934 - SGL_RS10785 0.70 +0.1
1,888,081 - SGL_RS10785 0.84 +0.2
1,888,654 + SGL_RS10790 0.67 -1.9
1,888,693 - SGL_RS10790 0.77 -3.0
1,888,728 + SGL_RS10790 0.87 -1.3
1,888,781 + -0.1
1,888,791 - -1.2
1,888,859 + -0.6
1,889,432 + SGL_RS10795 0.68 -0.1
1,889,432 + SGL_RS10795 0.68 -0.1
1,889,440 - SGL_RS10795 0.69 +0.2

Or see this region's nucleotide sequence