Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10605

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS10600 and SGL_RS10605 are separated by 130 nucleotidesSGL_RS10605 and SGL_RS10610 are separated by 528 nucleotides SGL_RS10600: SGL_RS10600 - YybS family protein, at 1,843,610 to 1,844,437 _RS10600 SGL_RS10605: SGL_RS10605 - Crp/Fnr family transcriptional regulator, at 1,844,568 to 1,845,266 _RS10605 SGL_RS10610: SGL_RS10610 - mannose-1-phosphate guanylyltransferase, at 1,845,795 to 1,846,865 _RS10610 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -1 0 1 2at 1844.604 kb on - strandat 1844.666 kb on + strand, within SGL_RS10605at 1844.690 kb on + strand, within SGL_RS10605at 1844.859 kb on + strand, within SGL_RS10605at 1844.953 kb on - strand, within SGL_RS10605at 1845.105 kb on + strand, within SGL_RS10605at 1845.133 kb on - strand, within SGL_RS10605at 1845.167 kb on - strand, within SGL_RS10605at 1845.295 kb on + strandat 1845.367 kb on + strandat 1845.386 kb on - strandat 1845.407 kb on - strandat 1845.463 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
1,844,604 - +1.3
1,844,666 + SGL_RS10605 0.14 +1.6
1,844,690 + SGL_RS10605 0.17 +2.0
1,844,859 + SGL_RS10605 0.42 +1.6
1,844,953 - SGL_RS10605 0.55 +2.1
1,845,105 + SGL_RS10605 0.77 +1.9
1,845,133 - SGL_RS10605 0.81 +1.7
1,845,167 - SGL_RS10605 0.86 +2.0
1,845,295 + +0.3
1,845,367 + -0.1
1,845,386 - -0.5
1,845,407 - -0.3
1,845,463 + +0.5

Or see this region's nucleotide sequence