Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10515

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10510 and SGL_RS10515 are separated by 89 nucleotidesSGL_RS10515 and SGL_RS10520 are separated by 61 nucleotides SGL_RS10510: SGL_RS10510 - membrane protein insertase YidC, at 1,827,753 to 1,828,907 _RS10510 SGL_RS10515: SGL_RS10515 - protein jag, at 1,828,997 to 1,829,491 _RS10515 SGL_RS10520: SGL_RS10520 - J domain-containing protein, at 1,829,553 to 1,830,497 _RS10520 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -1 0 1 2at 1829.272 kb on - strand, within SGL_RS10515at 1829.379 kb on - strand, within SGL_RS10515at 1829.699 kb on - strand, within SGL_RS10520at 1829.714 kb on - strand, within SGL_RS10520at 1829.820 kb on + strand, within SGL_RS10520at 1829.938 kb on + strand, within SGL_RS10520at 1830.065 kb on - strand, within SGL_RS10520at 1830.200 kb on + strand, within SGL_RS10520at 1830.347 kb on + strand, within SGL_RS10520

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,829,272 - SGL_RS10515 0.56 +1.4
1,829,379 - SGL_RS10515 0.77 +0.8
1,829,699 - SGL_RS10520 0.15 +1.8
1,829,714 - SGL_RS10520 0.17 +2.2
1,829,820 + SGL_RS10520 0.28 +2.3
1,829,938 + SGL_RS10520 0.41 +2.0
1,830,065 - SGL_RS10520 0.54 +2.6
1,830,200 + SGL_RS10520 0.68 +1.8
1,830,347 + SGL_RS10520 0.84 +2.3

Or see this region's nucleotide sequence