Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10280

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10275 and SGL_RS10280 are separated by 104 nucleotidesSGL_RS10280 and SGL_RS10285 are separated by 185 nucleotidesSGL_RS10285 and SGL_RS10290 are separated by 203 nucleotides SGL_RS10275: SGL_RS10275 - ATP-binding protein, at 1,777,729 to 1,779,981 _RS10275 SGL_RS10280: SGL_RS10280 - hypothetical protein, at 1,780,086 to 1,780,298 _RS10280 SGL_RS10285: SGL_RS10285 - late competence development ComFB family protein, at 1,780,484 to 1,781,005 _RS10285 SGL_RS10290: SGL_RS10290 - M48 family metalloprotease, at 1,781,209 to 1,782,060 _RS10290 Position (kb) 1780 1781Strain fitness (log2 ratio) -1 0 1at 1779.420 kb on + strand, within SGL_RS10275at 1779.462 kb on - strand, within SGL_RS10275at 1779.855 kb on + strandat 1779.871 kb on - strandat 1779.888 kb on - strandat 1779.964 kb on - strandat 1780.219 kb on + strand, within SGL_RS10280at 1780.219 kb on + strand, within SGL_RS10280at 1780.227 kb on - strand, within SGL_RS10280at 1780.227 kb on - strand, within SGL_RS10280at 1780.255 kb on - strand, within SGL_RS10280at 1780.287 kb on - strandat 1780.320 kb on + strandat 1780.383 kb on + strandat 1780.456 kb on + strandat 1780.581 kb on + strand, within SGL_RS10285at 1780.737 kb on - strand, within SGL_RS10285at 1780.752 kb on + strand, within SGL_RS10285at 1780.778 kb on - strand, within SGL_RS10285at 1780.806 kb on + strand, within SGL_RS10285at 1780.948 kb on - strand, within SGL_RS10285at 1780.960 kb on + strandat 1780.978 kb on + strandat 1780.994 kb on + strandat 1780.999 kb on + strandat 1781.046 kb on - strandat 1781.053 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,779,420 + SGL_RS10275 0.75 -0.3
1,779,462 - SGL_RS10275 0.77 -0.7
1,779,855 + -0.8
1,779,871 - -1.1
1,779,888 - -1.2
1,779,964 - -0.3
1,780,219 + SGL_RS10280 0.62 +0.8
1,780,219 + SGL_RS10280 0.62 +1.1
1,780,227 - SGL_RS10280 0.66 +0.8
1,780,227 - SGL_RS10280 0.66 +0.7
1,780,255 - SGL_RS10280 0.79 +1.1
1,780,287 - +1.4
1,780,320 + +0.2
1,780,383 + +0.4
1,780,456 + +0.6
1,780,581 + SGL_RS10285 0.19 +0.1
1,780,737 - SGL_RS10285 0.48 +0.5
1,780,752 + SGL_RS10285 0.51 +0.9
1,780,778 - SGL_RS10285 0.56 +0.3
1,780,806 + SGL_RS10285 0.62 +0.3
1,780,948 - SGL_RS10285 0.89 +0.4
1,780,960 + -0.1
1,780,978 + +0.2
1,780,994 + +0.2
1,780,999 + -0.4
1,781,046 - -0.4
1,781,053 - -0.9

Or see this region's nucleotide sequence