Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10005 and SGL_RS10010 are separated by 224 nucleotides SGL_RS10010 and SGL_RS10015 are separated by 185 nucleotides SGL_RS10015 and SGL_RS10020 are separated by 26 nucleotides SGL_RS10020 and SGL_RS18875 are separated by 252 nucleotides
SGL_RS10005: SGL_RS10005 - 30S ribosomal protein S2, at 1,722,160 to 1,722,969
_RS10005
SGL_RS10010: SGL_RS10010 - tRNA-Ile, at 1,723,194 to 1,723,266
_RS10010
SGL_RS10015: SGL_RS10015 - calcium/proton exchanger, at 1,723,452 to 1,724,570
_RS10015
SGL_RS10020: SGL_RS10020 - dCTP deaminase, at 1,724,597 to 1,725,178
_RS10020
SGL_RS18875: SGL_RS18875 - IS630 family transposase, at 1,725,431 to 1,726,009
_RS18875
Position (kb)
1723
1724
1725 Strain fitness (log2 ratio)
-1
0
1 at 1723.356 kb on - strand at 1723.358 kb on + strand at 1723.510 kb on - strand at 1723.581 kb on + strand, within SGL_RS10015 at 1723.612 kb on - strand, within SGL_RS10015 at 1723.653 kb on + strand, within SGL_RS10015 at 1723.726 kb on - strand, within SGL_RS10015 at 1723.726 kb on - strand, within SGL_RS10015 at 1723.741 kb on + strand, within SGL_RS10015 at 1723.911 kb on - strand, within SGL_RS10015 at 1723.956 kb on + strand, within SGL_RS10015 at 1723.966 kb on + strand, within SGL_RS10015 at 1724.002 kb on - strand, within SGL_RS10015 at 1724.151 kb on - strand, within SGL_RS10015 at 1724.157 kb on - strand, within SGL_RS10015 at 1724.182 kb on + strand, within SGL_RS10015 at 1724.207 kb on + strand, within SGL_RS10015 at 1724.232 kb on + strand, within SGL_RS10015 at 1724.238 kb on + strand, within SGL_RS10015 at 1724.268 kb on - strand, within SGL_RS10015 at 1724.270 kb on + strand, within SGL_RS10015 at 1724.320 kb on - strand, within SGL_RS10015 at 1724.320 kb on - strand, within SGL_RS10015 at 1724.399 kb on + strand, within SGL_RS10015 at 1724.414 kb on - strand, within SGL_RS10015 at 1724.481 kb on - strand at 1724.502 kb on - strand at 1724.595 kb on + strand at 1725.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,723,356 - -0.3 1,723,358 + +1.0 1,723,510 - +0.2 1,723,581 + SGL_RS10015 0.12 -0.0 1,723,612 - SGL_RS10015 0.14 +0.0 1,723,653 + SGL_RS10015 0.18 +0.7 1,723,726 - SGL_RS10015 0.24 +0.9 1,723,726 - SGL_RS10015 0.24 +0.4 1,723,741 + SGL_RS10015 0.26 +0.3 1,723,911 - SGL_RS10015 0.41 +0.3 1,723,956 + SGL_RS10015 0.45 +0.5 1,723,966 + SGL_RS10015 0.46 +1.4 1,724,002 - SGL_RS10015 0.49 +0.1 1,724,151 - SGL_RS10015 0.62 +0.3 1,724,157 - SGL_RS10015 0.63 +0.1 1,724,182 + SGL_RS10015 0.65 -0.7 1,724,207 + SGL_RS10015 0.67 +0.4 1,724,232 + SGL_RS10015 0.70 -0.2 1,724,238 + SGL_RS10015 0.70 -0.0 1,724,268 - SGL_RS10015 0.73 -0.2 1,724,270 + SGL_RS10015 0.73 +0.3 1,724,320 - SGL_RS10015 0.78 +0.8 1,724,320 - SGL_RS10015 0.78 +0.1 1,724,399 + SGL_RS10015 0.85 -0.2 1,724,414 - SGL_RS10015 0.86 -0.6 1,724,481 - +0.3 1,724,502 - +0.4 1,724,595 + +0.7 1,725,257 + +0.2
Or see this region's nucleotide sequence