Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09925

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09920 and SGL_RS09925 are separated by 93 nucleotidesSGL_RS09925 and SGL_RS09930 overlap by 4 nucleotidesSGL_RS09930 and SGL_RS09935 are separated by 77 nucleotides SGL_RS09920: SGL_RS09920 - hypothetical protein, at 1,705,868 to 1,707,223 _RS09920 SGL_RS09925: SGL_RS09925 - apolipoprotein N-acyltransferase, at 1,707,317 to 1,708,876 _RS09925 SGL_RS09930: SGL_RS09930 - glutaredoxin family protein, at 1,708,873 to 1,709,154 _RS09930 SGL_RS09935: SGL_RS09935 - sugar transferase, at 1,709,232 to 1,710,668 _RS09935 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -1 0 1 2at 1706.347 kb on + strand, within SGL_RS09920at 1706.499 kb on - strand, within SGL_RS09920at 1706.503 kb on + strand, within SGL_RS09920at 1706.560 kb on - strand, within SGL_RS09920at 1706.603 kb on - strand, within SGL_RS09920at 1706.736 kb on + strand, within SGL_RS09920at 1706.747 kb on + strand, within SGL_RS09920at 1706.830 kb on - strand, within SGL_RS09920at 1706.843 kb on - strand, within SGL_RS09920at 1706.918 kb on - strand, within SGL_RS09920at 1706.940 kb on - strand, within SGL_RS09920at 1707.061 kb on + strand, within SGL_RS09920at 1707.173 kb on - strandat 1707.335 kb on + strandat 1707.343 kb on - strandat 1707.425 kb on - strandat 1707.461 kb on + strandat 1707.474 kb on - strand, within SGL_RS09925at 1707.494 kb on + strand, within SGL_RS09925at 1707.521 kb on + strand, within SGL_RS09925at 1707.763 kb on - strand, within SGL_RS09925at 1707.767 kb on + strand, within SGL_RS09925at 1707.775 kb on - strand, within SGL_RS09925at 1707.786 kb on + strand, within SGL_RS09925at 1708.264 kb on + strand, within SGL_RS09925at 1708.278 kb on - strand, within SGL_RS09925at 1708.307 kb on + strand, within SGL_RS09925at 1708.376 kb on - strand, within SGL_RS09925at 1708.420 kb on + strand, within SGL_RS09925at 1708.428 kb on - strand, within SGL_RS09925at 1708.477 kb on - strand, within SGL_RS09925at 1708.525 kb on + strand, within SGL_RS09925at 1708.535 kb on + strand, within SGL_RS09925at 1708.537 kb on + strand, within SGL_RS09925at 1708.545 kb on - strand, within SGL_RS09925at 1708.577 kb on + strand, within SGL_RS09925at 1708.577 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.601 kb on + strand, within SGL_RS09925at 1708.609 kb on - strand, within SGL_RS09925at 1708.783 kb on - strandat 1708.860 kb on + strandat 1708.998 kb on + strand, within SGL_RS09930at 1709.174 kb on + strandat 1709.308 kb on - strandat 1709.377 kb on - strand, within SGL_RS09935at 1709.505 kb on + strand, within SGL_RS09935at 1709.513 kb on - strand, within SGL_RS09935at 1709.525 kb on - strand, within SGL_RS09935at 1709.558 kb on + strand, within SGL_RS09935at 1709.561 kb on - strand, within SGL_RS09935at 1709.692 kb on + strand, within SGL_RS09935at 1709.704 kb on + strand, within SGL_RS09935at 1709.707 kb on - strand, within SGL_RS09935at 1709.755 kb on + strand, within SGL_RS09935at 1709.775 kb on - strand, within SGL_RS09935at 1709.817 kb on + strand, within SGL_RS09935at 1709.817 kb on + strand, within SGL_RS09935at 1709.827 kb on + strand, within SGL_RS09935at 1709.830 kb on - strand, within SGL_RS09935at 1709.840 kb on + strand, within SGL_RS09935

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,706,347 + SGL_RS09920 0.35 +0.2
1,706,499 - SGL_RS09920 0.47 +0.4
1,706,503 + SGL_RS09920 0.47 -0.2
1,706,560 - SGL_RS09920 0.51 +0.6
1,706,603 - SGL_RS09920 0.54 -0.3
1,706,736 + SGL_RS09920 0.64 -0.1
1,706,747 + SGL_RS09920 0.65 -0.4
1,706,830 - SGL_RS09920 0.71 +0.5
1,706,843 - SGL_RS09920 0.72 +0.4
1,706,918 - SGL_RS09920 0.77 +1.6
1,706,940 - SGL_RS09920 0.79 +0.8
1,707,061 + SGL_RS09920 0.88 -0.7
1,707,173 - -0.1
1,707,335 + +0.9
1,707,343 - +1.4
1,707,425 - +1.6
1,707,461 + +1.6
1,707,474 - SGL_RS09925 0.10 +1.6
1,707,494 + SGL_RS09925 0.11 +1.1
1,707,521 + SGL_RS09925 0.13 +1.8
1,707,763 - SGL_RS09925 0.29 +2.1
1,707,767 + SGL_RS09925 0.29 +1.8
1,707,775 - SGL_RS09925 0.29 +1.7
1,707,786 + SGL_RS09925 0.30 +0.8
1,708,264 + SGL_RS09925 0.61 +1.8
1,708,278 - SGL_RS09925 0.62 +1.6
1,708,307 + SGL_RS09925 0.63 +1.5
1,708,376 - SGL_RS09925 0.68 +2.0
1,708,420 + SGL_RS09925 0.71 +1.6
1,708,428 - SGL_RS09925 0.71 +1.9
1,708,477 - SGL_RS09925 0.74 +1.8
1,708,525 + SGL_RS09925 0.77 +1.6
1,708,535 + SGL_RS09925 0.78 +1.4
1,708,537 + SGL_RS09925 0.78 +2.1
1,708,545 - SGL_RS09925 0.79 +1.3
1,708,577 + SGL_RS09925 0.81 +1.4
1,708,577 + SGL_RS09925 0.81 +0.6
1,708,601 + SGL_RS09925 0.82 +1.4
1,708,601 + SGL_RS09925 0.82 +1.7
1,708,601 + SGL_RS09925 0.82 +0.9
1,708,609 - SGL_RS09925 0.83 +1.1
1,708,783 - +1.2
1,708,860 + +0.4
1,708,998 + SGL_RS09930 0.44 -1.3
1,709,174 + +0.3
1,709,308 - +1.3
1,709,377 - SGL_RS09935 0.10 +1.4
1,709,505 + SGL_RS09935 0.19 +1.3
1,709,513 - SGL_RS09935 0.20 +1.5
1,709,525 - SGL_RS09935 0.20 +2.0
1,709,558 + SGL_RS09935 0.23 +1.7
1,709,561 - SGL_RS09935 0.23 +1.5
1,709,692 + SGL_RS09935 0.32 +1.3
1,709,704 + SGL_RS09935 0.33 +0.9
1,709,707 - SGL_RS09935 0.33 +1.6
1,709,755 + SGL_RS09935 0.36 +1.5
1,709,775 - SGL_RS09935 0.38 +1.1
1,709,817 + SGL_RS09935 0.41 +2.3
1,709,817 + SGL_RS09935 0.41 +1.6
1,709,827 + SGL_RS09935 0.41 +1.7
1,709,830 - SGL_RS09935 0.42 +1.7
1,709,840 + SGL_RS09935 0.42 +1.4

Or see this region's nucleotide sequence