Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09865 and SGL_RS09870 are separated by 79 nucleotides SGL_RS09870 and SGL_RS09875 are separated by 71 nucleotides SGL_RS09875 and SGL_RS09880 overlap by 11 nucleotides SGL_RS09880 and SGL_RS09885 are separated by 461 nucleotides
SGL_RS09865: SGL_RS09865 - cytochrome c oxidase subunit II, at 1,697,011 to 1,697,913
_RS09865
SGL_RS09870: SGL_RS09870 - pantothenate kinase, at 1,697,993 to 1,698,766
_RS09870
SGL_RS09875: SGL_RS09875 - glycosyltransferase, at 1,698,838 to 1,699,980
_RS09875
SGL_RS09880: SGL_RS09880 - hypothetical protein, at 1,699,970 to 1,700,431
_RS09880
SGL_RS09885: SGL_RS09885 - NAD(P)H-quinone oxidoreductase subunit L, at 1,700,893 to 1,701,135
_RS09885
Position (kb)
1698
1699
1700 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1697.865 kb on - strand at 1698.023 kb on + strand at 1698.048 kb on - strand at 1698.766 kb on + strand at 1698.775 kb on - strand at 1698.823 kb on - strand at 1698.877 kb on + strand at 1698.885 kb on - strand at 1698.885 kb on - strand at 1698.897 kb on + strand at 1698.931 kb on - strand at 1698.932 kb on - strand at 1698.960 kb on - strand, within SGL_RS09875 at 1698.961 kb on + strand, within SGL_RS09875 at 1698.961 kb on + strand, within SGL_RS09875 at 1698.976 kb on - strand, within SGL_RS09875 at 1698.981 kb on - strand, within SGL_RS09875 at 1699.021 kb on - strand, within SGL_RS09875 at 1699.047 kb on + strand, within SGL_RS09875 at 1699.055 kb on - strand, within SGL_RS09875 at 1699.072 kb on - strand, within SGL_RS09875 at 1699.079 kb on - strand, within SGL_RS09875 at 1699.164 kb on + strand, within SGL_RS09875 at 1699.357 kb on - strand, within SGL_RS09875 at 1699.425 kb on - strand, within SGL_RS09875 at 1699.538 kb on - strand, within SGL_RS09875 at 1699.571 kb on - strand, within SGL_RS09875 at 1699.727 kb on + strand, within SGL_RS09875 at 1699.753 kb on - strand, within SGL_RS09875 at 1700.056 kb on + strand, within SGL_RS09880 at 1700.105 kb on + strand, within SGL_RS09880 at 1700.206 kb on + strand, within SGL_RS09880 at 1700.241 kb on + strand, within SGL_RS09880 at 1700.267 kb on + strand, within SGL_RS09880 at 1700.285 kb on - strand, within SGL_RS09880 at 1700.389 kb on - strand at 1700.427 kb on + strand at 1700.603 kb on - strand at 1700.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,697,865 - -0.1 1,698,023 + -0.0 1,698,048 - +0.5 1,698,766 + +0.5 1,698,775 - -0.1 1,698,823 - -1.0 1,698,877 + -0.2 1,698,885 - -3.9 1,698,885 - -1.5 1,698,897 + -0.9 1,698,931 - -1.0 1,698,932 - -1.7 1,698,960 - SGL_RS09875 0.11 -0.4 1,698,961 + SGL_RS09875 0.11 -0.6 1,698,961 + SGL_RS09875 0.11 -0.5 1,698,976 - SGL_RS09875 0.12 -0.7 1,698,981 - SGL_RS09875 0.13 -0.3 1,699,021 - SGL_RS09875 0.16 -0.5 1,699,047 + SGL_RS09875 0.18 -1.4 1,699,055 - SGL_RS09875 0.19 -1.0 1,699,072 - SGL_RS09875 0.20 -1.6 1,699,079 - SGL_RS09875 0.21 -0.4 1,699,164 + SGL_RS09875 0.29 -0.6 1,699,357 - SGL_RS09875 0.45 -0.2 1,699,425 - SGL_RS09875 0.51 +0.5 1,699,538 - SGL_RS09875 0.61 -1.0 1,699,571 - SGL_RS09875 0.64 -0.6 1,699,727 + SGL_RS09875 0.78 -3.3 1,699,753 - SGL_RS09875 0.80 -0.2 1,700,056 + SGL_RS09880 0.19 +0.9 1,700,105 + SGL_RS09880 0.29 +0.6 1,700,206 + SGL_RS09880 0.51 -0.7 1,700,241 + SGL_RS09880 0.59 +0.5 1,700,267 + SGL_RS09880 0.64 +0.0 1,700,285 - SGL_RS09880 0.68 +0.7 1,700,389 - +1.0 1,700,427 + +0.7 1,700,603 - -0.6 1,700,611 + +0.6
Or see this region's nucleotide sequence