Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09575 and SGL_RS09580 are separated by 266 nucleotides SGL_RS09580 and SGL_RS09585 are separated by 39 nucleotides SGL_RS09585 and SGL_RS09590 are separated by 80 nucleotides
SGL_RS09575: SGL_RS09575 - hypothetical protein, at 1,639,944 to 1,640,519
_RS09575
SGL_RS09580: SGL_RS09580 - DUF29 domain-containing protein, at 1,640,786 to 1,641,238
_RS09580
SGL_RS09585: SGL_RS09585 - glycosyltransferase family 2 protein, at 1,641,278 to 1,642,207
_RS09585
SGL_RS09590: SGL_RS09590 - porphobilinogen synthase, at 1,642,288 to 1,643,271
_RS09590
Position (kb)
1641
1642
1643 Strain fitness (log2 ratio)
-1
0
1 at 1640.360 kb on - strand, within SGL_RS09575 at 1640.362 kb on + strand, within SGL_RS09575 at 1640.403 kb on - strand, within SGL_RS09575 at 1640.406 kb on - strand, within SGL_RS09575 at 1640.406 kb on - strand, within SGL_RS09575 at 1640.480 kb on - strand at 1640.524 kb on - strand at 1640.557 kb on + strand at 1640.599 kb on + strand at 1640.610 kb on + strand at 1640.644 kb on + strand at 1640.696 kb on - strand at 1640.991 kb on - strand, within SGL_RS09580 at 1641.067 kb on - strand, within SGL_RS09580 at 1641.110 kb on + strand, within SGL_RS09580 at 1641.260 kb on - strand at 1641.368 kb on - strand at 1641.604 kb on - strand, within SGL_RS09585 at 1641.611 kb on - strand, within SGL_RS09585 at 1641.649 kb on + strand, within SGL_RS09585 at 1641.649 kb on + strand, within SGL_RS09585 at 1641.657 kb on - strand, within SGL_RS09585 at 1641.668 kb on + strand, within SGL_RS09585 at 1641.784 kb on + strand, within SGL_RS09585 at 1641.784 kb on + strand, within SGL_RS09585 at 1641.879 kb on + strand, within SGL_RS09585 at 1641.934 kb on + strand, within SGL_RS09585 at 1641.941 kb on + strand, within SGL_RS09585 at 1641.949 kb on - strand, within SGL_RS09585 at 1641.985 kb on - strand, within SGL_RS09585 at 1642.027 kb on - strand, within SGL_RS09585 at 1642.069 kb on + strand, within SGL_RS09585 at 1642.072 kb on - strand, within SGL_RS09585 at 1642.072 kb on - strand, within SGL_RS09585 at 1642.102 kb on + strand, within SGL_RS09585 at 1642.112 kb on + strand, within SGL_RS09585 at 1642.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,640,360 - SGL_RS09575 0.72 -0.0 1,640,362 + SGL_RS09575 0.73 -0.4 1,640,403 - SGL_RS09575 0.80 +0.6 1,640,406 - SGL_RS09575 0.80 -0.4 1,640,406 - SGL_RS09575 0.80 +0.1 1,640,480 - -0.3 1,640,524 - +0.5 1,640,557 + +0.4 1,640,599 + +0.1 1,640,610 + -0.3 1,640,644 + +0.2 1,640,696 - -0.3 1,640,991 - SGL_RS09580 0.45 -0.2 1,641,067 - SGL_RS09580 0.62 -0.2 1,641,110 + SGL_RS09580 0.72 +0.8 1,641,260 - +0.2 1,641,368 - -0.2 1,641,604 - SGL_RS09585 0.35 +0.9 1,641,611 - SGL_RS09585 0.36 +1.3 1,641,649 + SGL_RS09585 0.40 +1.4 1,641,649 + SGL_RS09585 0.40 +0.8 1,641,657 - SGL_RS09585 0.41 +0.9 1,641,668 + SGL_RS09585 0.42 +0.8 1,641,784 + SGL_RS09585 0.54 +1.7 1,641,784 + SGL_RS09585 0.54 +1.4 1,641,879 + SGL_RS09585 0.65 +0.4 1,641,934 + SGL_RS09585 0.71 +0.9 1,641,941 + SGL_RS09585 0.71 +1.3 1,641,949 - SGL_RS09585 0.72 +1.0 1,641,985 - SGL_RS09585 0.76 +1.4 1,642,027 - SGL_RS09585 0.81 +1.7 1,642,069 + SGL_RS09585 0.85 +0.6 1,642,072 - SGL_RS09585 0.85 +1.5 1,642,072 - SGL_RS09585 0.85 +1.4 1,642,102 + SGL_RS09585 0.89 +1.5 1,642,112 + SGL_RS09585 0.90 +1.6 1,642,163 + +1.2
Or see this region's nucleotide sequence