Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09285 and SGL_RS09290 are separated by 72 nucleotides SGL_RS09290 and SGL_RS09295 are separated by 113 nucleotides SGL_RS09295 and SGL_RS09305 are separated by 553 nucleotides
SGL_RS09285: SGL_RS09285 - global nitrogen regulator NtcA, at 1,589,384 to 1,590,061
_RS09285
SGL_RS09290: SGL_RS09290 - hypothetical protein, at 1,590,134 to 1,590,382
_RS09290
SGL_RS09295: SGL_RS09295 - alpha/beta hydrolase, at 1,590,496 to 1,592,364
_RS09295
SGL_RS09305: SGL_RS09305 - adenosyl-hopene transferase HpnH, at 1,592,918 to 1,594,000
_RS09305
Position (kb)
1590
1591
1592
1593 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1590.117 kb on + strand at 1590.142 kb on + strand at 1590.205 kb on - strand, within SGL_RS09290 at 1590.289 kb on - strand, within SGL_RS09290 at 1590.456 kb on + strand at 1590.581 kb on - strand at 1590.664 kb on - strand at 1590.900 kb on + strand, within SGL_RS09295 at 1590.906 kb on - strand, within SGL_RS09295 at 1590.906 kb on - strand, within SGL_RS09295 at 1591.044 kb on - strand, within SGL_RS09295 at 1591.063 kb on - strand, within SGL_RS09295 at 1591.063 kb on - strand, within SGL_RS09295 at 1591.119 kb on - strand, within SGL_RS09295 at 1591.157 kb on - strand, within SGL_RS09295 at 1591.227 kb on + strand, within SGL_RS09295 at 1591.227 kb on + strand, within SGL_RS09295 at 1591.528 kb on + strand, within SGL_RS09295 at 1591.535 kb on - strand, within SGL_RS09295 at 1591.575 kb on + strand, within SGL_RS09295 at 1591.645 kb on - strand, within SGL_RS09295 at 1591.666 kb on - strand, within SGL_RS09295 at 1591.700 kb on - strand, within SGL_RS09295 at 1591.754 kb on - strand, within SGL_RS09295 at 1591.783 kb on + strand, within SGL_RS09295 at 1591.783 kb on + strand, within SGL_RS09295 at 1591.786 kb on - strand, within SGL_RS09295 at 1591.823 kb on - strand, within SGL_RS09295 at 1591.881 kb on + strand, within SGL_RS09295 at 1591.889 kb on - strand, within SGL_RS09295 at 1591.908 kb on - strand, within SGL_RS09295 at 1591.943 kb on + strand, within SGL_RS09295 at 1591.977 kb on - strand, within SGL_RS09295 at 1592.067 kb on + strand, within SGL_RS09295 at 1592.106 kb on + strand, within SGL_RS09295 at 1592.120 kb on + strand, within SGL_RS09295 at 1592.159 kb on - strand, within SGL_RS09295 at 1592.702 kb on - strand at 1592.853 kb on - strand at 1592.853 kb on - strand at 1592.911 kb on + strand at 1593.006 kb on + strand at 1593.088 kb on + strand, within SGL_RS09305 at 1593.106 kb on - strand, within SGL_RS09305 at 1593.185 kb on + strand, within SGL_RS09305 at 1593.193 kb on - strand, within SGL_RS09305 at 1593.193 kb on - strand, within SGL_RS09305 at 1593.209 kb on + strand, within SGL_RS09305 at 1593.209 kb on - strand, within SGL_RS09305 at 1593.265 kb on + strand, within SGL_RS09305 at 1593.295 kb on + strand, within SGL_RS09305
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,590,117 + -1.4 1,590,142 + +1.0 1,590,205 - SGL_RS09290 0.29 +2.2 1,590,289 - SGL_RS09290 0.62 +1.9 1,590,456 + -1.2 1,590,581 - -2.5 1,590,664 - -5.6 1,590,900 + SGL_RS09295 0.22 -5.1 1,590,906 - SGL_RS09295 0.22 -6.7 1,590,906 - SGL_RS09295 0.22 -5.5 1,591,044 - SGL_RS09295 0.29 -5.7 1,591,063 - SGL_RS09295 0.30 -2.9 1,591,063 - SGL_RS09295 0.30 -5.7 1,591,119 - SGL_RS09295 0.33 -3.5 1,591,157 - SGL_RS09295 0.35 -5.9 1,591,227 + SGL_RS09295 0.39 -5.6 1,591,227 + SGL_RS09295 0.39 -4.8 1,591,528 + SGL_RS09295 0.55 -4.1 1,591,535 - SGL_RS09295 0.56 -2.6 1,591,575 + SGL_RS09295 0.58 -5.2 1,591,645 - SGL_RS09295 0.61 -4.7 1,591,666 - SGL_RS09295 0.63 -3.8 1,591,700 - SGL_RS09295 0.64 -3.7 1,591,754 - SGL_RS09295 0.67 -5.2 1,591,783 + SGL_RS09295 0.69 -2.8 1,591,783 + SGL_RS09295 0.69 -6.3 1,591,786 - SGL_RS09295 0.69 -2.8 1,591,823 - SGL_RS09295 0.71 -4.8 1,591,881 + SGL_RS09295 0.74 -3.2 1,591,889 - SGL_RS09295 0.75 -3.3 1,591,908 - SGL_RS09295 0.76 -2.4 1,591,943 + SGL_RS09295 0.77 -3.1 1,591,977 - SGL_RS09295 0.79 -5.0 1,592,067 + SGL_RS09295 0.84 -4.8 1,592,106 + SGL_RS09295 0.86 -4.8 1,592,120 + SGL_RS09295 0.87 -2.6 1,592,159 - SGL_RS09295 0.89 -4.5 1,592,702 - +0.0 1,592,853 - +0.5 1,592,853 - +0.5 1,592,911 + -0.3 1,593,006 + -3.4 1,593,088 + SGL_RS09305 0.16 -1.6 1,593,106 - SGL_RS09305 0.17 -2.7 1,593,185 + SGL_RS09305 0.25 +1.0 1,593,193 - SGL_RS09305 0.25 -3.3 1,593,193 - SGL_RS09305 0.25 +0.6 1,593,209 + SGL_RS09305 0.27 -1.8 1,593,209 - SGL_RS09305 0.27 -2.4 1,593,265 + SGL_RS09305 0.32 -3.6 1,593,295 + SGL_RS09305 0.35 -1.4
Or see this region's nucleotide sequence